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At first I thought you were looking for working-dir, see https://quarto.org/docs/projects/code-execution.html#working-dir.

But it's unclear what you want to have.
Quarto will keep your source code directory tree structure, because it has no reason to flatten this.
You can use aliases or as you seem to do _redirects Netlify configuration file to make it look like the files are served from your website root, see https://quarto.org/docs/websites/website-navigation.html#redirects.


For a more precise answer, you might want to consider sharing a small self-contained "working" (reproducible) example to work with, i.e., a complete Quarto document or a Git repository.

You can share a Quarto docum…

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@dweng0
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@allefeld
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websites Issues creating websites publishing
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