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FWIW the rstudio.github.io/r-manuals (https://github.com/rstudio/r-manuals) example from the gallery is a website that organize a collection of books. You can look at the R script that organize the workflow. We first generate the books using a template YAML and then include the HTML books into the website before rendering the website.

There is probably other ways to do this meta organization but I figured this one is worth sharing as it worked fine for us.

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@jvvk
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Answer selected by mcanouil
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