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It seems like a bug, but you should not use keep-ipynb to embed the notebook.
This file is an intermediary file. keep- options are for debugging.
If you want to use a Jupyter Notebook out of a Quarto document, set ipynb as format.

Regarding your error message when using the Jupyter Notebook, since the cells were not executed, there is nothing in it you can use to embed.

ERROR: The cell fig-index-plot does not exist in notebook

I opened an issue:

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@mpf

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@mcanouil

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