diff --git a/.github/workflows/actions/quarto-dev/action.yml b/.github/workflows/actions/quarto-dev/action.yml index b28d3e73519..88b737e828f 100644 --- a/.github/workflows/actions/quarto-dev/action.yml +++ b/.github/workflows/actions/quarto-dev/action.yml @@ -49,9 +49,9 @@ runs: # Convert the list to an array $modifiedFilesArray = $modifiedFiles -split "`n" | ForEach-Object { $_.Trim() } - If ($modifiedFilesArray -contains "tests/Pipfile.lock") { - Write-Output "::warning::test/Pipfile.lock has been modified." - $modifiedFilesArray = $modifiedFilesArray | Where-Object { $_ -notmatch "Pipfile.lock" } + If ($modifiedFilesArray -contains "tests/uv.lock") { + Write-Output "::warning::test/uv.lock has been modified." + $modifiedFilesArray = $modifiedFilesArray | Where-Object { $_ -notmatch "uv.lock" } } # Count the number of modified files diff --git a/.github/workflows/test-ff-matrix.yml b/.github/workflows/test-ff-matrix.yml index 8a7fc0f8ef2..16f1bd9db2b 100644 --- a/.github/workflows/test-ff-matrix.yml +++ b/.github/workflows/test-ff-matrix.yml @@ -114,18 +114,17 @@ jobs: env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - - name: Set up Python - uses: actions/setup-python@v4 + - name: Install uv for Python + uses: astral-sh/setup-uv@v3 with: - python-version: "3.12" - cache: "pipenv" - cache-dependency-path: "./tests/Pipfile.lock" + version: "0.4.30" + enable-cache: true + cache-dependency-glob: "tests/uv.lock" - - name: Restore Python Dependencies + - name: Install Python and Dependencies working-directory: tests run: | - python -m pip install pipenv - pipenv install + uv sync --frozen - uses: ./.github/workflows/actions/quarto-dev @@ -157,8 +156,8 @@ jobs: run: | # Setup IJulia with the jupyter from the Python environment # https://julialang.github.io/IJulia.jl/stable/manual/installation/ - export JUPYTER=$(find $(dirname $(pipenv run which jupyter))/ -type f -name "jupyter.exe" -o -name "jupyter") - pipenv run julia --color=yes --project=. -e "import Pkg; Pkg.instantiate(); Pkg.build(\"IJulia\"); Pkg.precompile()" + export JUPYTER=$(find $(dirname $(uv run --frozen which jupyter))/ -type f -name "jupyter.exe" -o -name "jupyter") + uv run --frozen julia --color=yes --project=. -e "import Pkg; Pkg.instantiate(); Pkg.build(\"IJulia\"); Pkg.precompile()" echo "Julia Jupyter:" julia --project=. -e "import IJulia;println(IJulia.JUPYTER);println(IJulia.find_jupyter_subcommand(\"notebook\"))" diff --git a/.github/workflows/test-smokes.yml b/.github/workflows/test-smokes.yml index f76bb9e189e..1849c17317c 100644 --- a/.github/workflows/test-smokes.yml +++ b/.github/workflows/test-smokes.yml @@ -140,18 +140,17 @@ jobs: env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - - name: Set up Python - uses: actions/setup-python@v5 + - name: Install uv for Python + uses: astral-sh/setup-uv@v3 with: - python-version: "3.12" - cache: "pipenv" - cache-dependency-path: "./tests/Pipfile.lock" + version: "0.4.30" + enable-cache: true + cache-dependency-glob: "tests/uv.lock" - - name: Restore Python Dependencies + - name: Install Python and Dependencies working-directory: tests run: | - python -m pip install pipenv==2024.3.0 - pipenv install + uv sync --frozen - uses: ./.github/workflows/actions/quarto-dev @@ -181,8 +180,8 @@ jobs: run: | # Setup IJulia with the jupyter from the Python environment # https://julialang.github.io/IJulia.jl/stable/manual/installation/ - export JUPYTER=$(find $(dirname $(pipenv run which jupyter))/ -type f -name "jupyter.exe" -o -name "jupyter") - pipenv run julia --color=yes --project=. -e "import Pkg; Pkg.instantiate(); Pkg.build(\"IJulia\"); Pkg.precompile()" + export JUPYTER=$(find $(dirname $(uv run --frozen which jupyter))/ -type f -name "jupyter.exe" -o -name "jupyter") + uv run --frozen julia --color=yes --project=. -e "import Pkg; Pkg.instantiate(); Pkg.build(\"IJulia\"); Pkg.precompile()" echo "Julia Jupyter:" julia --project=. -e "import IJulia;println(IJulia.JUPYTER);println(IJulia.find_jupyter_subcommand(\"notebook\"))" diff --git a/dev-docs/configuring-test-deps.md b/dev-docs/configuring-test-deps.md index fc530d13cbb..a9887b55095 100644 --- a/dev-docs/configuring-test-deps.md +++ b/dev-docs/configuring-test-deps.md @@ -16,16 +16,20 @@ ## Python -- Install `pyenv` -- Install a specic version e.g `pyenv install 3.12.1` -- Configure `tests` to use a specific version +- Install `uv` + + About uv: https://docs.astral.sh/uv/ + + `uv` will handle the python versions and virtual environments based on the `.python-version` we have in `tests/` folder. + + To set the version to use to ``` cd tests - pyenv local 3.12.1 + echo '3.12.7' > .python-version ``` - This way when calling `python` in `tests` folder it will always be Python 3.12.1 version + This `uv run` and `uv sync` will create the right virtual environment and use it. ## R @@ -43,4 +47,35 @@ # Installing the dependencies in each languages packages -- From `tests` folder, run `configure-test-env` scripts to restore dependencies for each tools +- From `tests` folder, run `configure-test-env.sh` or `configure-test-env.ps1` scripts to restore dependencies for each tools + +# Adding some tests dependencies + +## Python + +- Use `uv add` to add the deps to `pyproject.toml`, install related dependencies in the virtual environment and lock the versions in `uv.lock`. + Example: + ``` + cd tests + uv add jupyter + ``` + +## R + +- Add the dependencies in `DESCRIPTION` file +- Run `renv::install()` to install the dependencies +- Run `renv::snapshot()` to lock the versions in `renv.lock` + +## Julia + +- Run Julia in the `tests/` project and add the dependencies + Example: + ```bash + cd tests + julia --project=. + ``` + then in Julia console + ```julia + using Pkg + Pkg.add("DataFrames") + ``` diff --git a/tests/.python-version b/tests/.python-version index 171a6a93d62..56bb66057d2 100644 --- a/tests/.python-version +++ b/tests/.python-version @@ -1 +1 @@ -3.12.1 +3.12.7 diff --git a/tests/Pipfile b/tests/Pipfile deleted file mode 100644 index 056f88efd11..00000000000 --- a/tests/Pipfile +++ /dev/null @@ -1,23 +0,0 @@ -[[source]] -url = "https://pypi.org/simple" -verify_ssl = true -name = "pypi" - 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see various way at: https://docs.astral.sh/uv/getting-started/installation/ -`Pipfile` contains our requirement for the tests project. It can be manually updated but it is best to just use `pipenv` commands. For instance, adding a new dependency can be done with `pipenv install plotly` and it will update the file. -It will also update the `Pipfile.lock` - this file should never be updated manually. +**uv** will handle the python versions, including its installation, based on the `.python-version` we have in `tests/` folder. It will also manage the virtual environment in `.venv` folder. -See other [`pipenv` command](https://pipenv.pypa.io/en/latest/#basic-commands-and-concepts) if you need to tweak the python environment. +A virtual environment will be created locally in `.venv` folder (ignored on git) and activated when running tests. `uv run` can help activating the environment outside of running tests to run a command in the environment. -For a change of python versionn, `pipenv --rm` will need to be called so that the current virtual environment is removed and a new one is created with the new python version when running `pipenv install` inside `configure-test-env` script. +`pyproject.toml` contains our dependencies requirement for the tests project. It can be manually updated but it is best to just use `uv` commands. For instance, adding a new dependency can be done with `uv add plotly` and it will update the file, update the `uv.lock` and install in the virtual environment. `uv.lock` should never be updated manually, and it is tracked by git, as it allows to recreate the exact environment on different environment (Linux, Mac, Windows, locally and on CI). + +See other [`uv` command](https://docs.astral.sh/uv/getting-started/features/) if you need to do more. + +For a change of python versionn, `.python-version` needs to be updated, and then `uv` will take care of the rest. `configure-test-env` script will check for `uv` and if installed, it will called `uv sync` to make sure the project virtual environment is up to date with the lockfile. + +Note that `./run-test.ps1` and `.run-tests.sh` : + +- run `configure-test-env` script by default, unless `QUARTO_TESTS_NO_CONFIG` environment variable is set to a non-empty value. +- Activate the local virtualenv espected in `.venv`. Set `QUARTO_TESTS_FORCE_NO_VENV` to a non-empty value to prevent this behavior. (It replaces `QUARTO_TESTS_FORCE_NO_PIPENV` which still is considered for backward compatibility but deprecated) #### Julia diff --git a/tests/configure-test-env.ps1 b/tests/configure-test-env.ps1 index ac019f230cb..2cb9d262f3c 100644 --- a/tests/configure-test-env.ps1 +++ b/tests/configure-test-env.ps1 @@ -23,22 +23,13 @@ try { $null = gcm python -ea stop; $python=$true } catch { } If ( $py -and $python) { - Write-Host "Setting up python environnement with pipenv" - try { $null = gcm pipenv -ea stop; $pipenv=$true } catch { - Write-Host -ForegroundColor red "No pipenv found in PATH - Installing pipenv running ``pip install pipenv``" + Write-Host "Setting up python environnement with uv" + try { $null = gcm uv -ea stop; $uv=$true } catch { + Write-Host -ForegroundColor red "No uv found in PATH - Install uv please: https://docs.astral.sh/uv/getting-started/installation/" } - If ($null -eq $pipenv) { - python -m pip install pipenv - try { $null = gcm pyenv -ea stop; $pyenv=$true } catch { } - If ($pyenv) { - pyenv rehash - } - } - # our default is pipenv to use its own virtualenv and be in project directory - $Env:PIPENV_IGNORE_VIRTUALENVS=1 - $Env:PIPENV_VENV_IN_PROJECT=1 - pipenv install - $pipenv=$true + # install from lockfile + uv sync --frozen + $uv=$true } # Check Julia environment --- diff --git a/tests/configure-test-env.sh b/tests/configure-test-env.sh index 413e6f633e4..ebf7590d008 100755 --- a/tests/configure-test-env.sh +++ b/tests/configure-test-env.sh @@ -28,20 +28,14 @@ then fi if [ -n $python_exists ] then - pipenv_exist=$(command -v pipenv) - if [ -z $pipenv_exist ] + uv_exist=$(command -v uv) + if [ -z $uv_exist ] + echo "Setting up python environnement with uv" + # create or sync the virtual env in the project + uv sync --frozen then - echo "No pipenv found - Installing pipenv running ``pip install pipenv``..." - $python_exists -m pip install pipenv - echo "...pipenv installed" + echo "No uv found - Install uv please: https://docs.astral.sh/uv/getting-started/installation/" fi - # specific for pyenv shim - [[ -n $(command -v pyenv) ]] && pyenv rehash - echo "Setting up python environnement with pipenv" - # our default is pipenv to use its own virtualenv and be in project directory - export PIPENV_IGNORE_VIRTUALENVS=1 - export PIPENV_VENV_IN_PROJECT=1 - pipenv install fi # Check Julia environment --- diff --git a/tests/pyproject.toml b/tests/pyproject.toml new file mode 100644 index 00000000000..43550e30720 --- /dev/null +++ b/tests/pyproject.toml @@ -0,0 +1,18 @@ +[project] +name = "tests" +version = "0.1.0" +description = "Quarto Tests" +requires-python = ">=3.12" +dependencies = [ + "bokeh-sampledata>=2024.2", + "bokeh>=3.6.0", + "ipyleaflet>=0.19.2", + "itables>=2.2.3", + "jupyter-cache>=1.0.0", + "jupyter>=1.1.1", + "matplotlib>=3.9.2", + "pandas>=2.2.3", + "papermill>=2.6.0", + "seaborn>=0.13.2", + "shiny>=1.2.0", +] diff --git a/tests/run-tests.ps1 b/tests/run-tests.ps1 index 6f50092f95c..545b251122f 100644 --- a/tests/run-tests.ps1 +++ b/tests/run-tests.ps1 @@ -138,12 +138,16 @@ $DENO_ARGS += -split $QUARTO_IMPORT_MAP_ARG $DENO_ARGS += $TESTS_TO_RUN # Activate python virtualenv -# set QUARTO_TESTS_FORCE_NO_PIPENV env var to not activate the virtualenv managed by pipenv for the project -If ($null -eq $Env:QUARTO_TESTS_FORCE_NO_PIPENV) { +# set QUARTO_TESTS_FORCE_NO_VENV env var to not activate the virtualenv located in the project +# QUARTO_TESTS_FORCE_NO_PIPENV is there for backward compatibility +If ($null -eq $Env:QUARTO_TESTS_FORCE_NO_VENV -and $null -ne $Env:QUARTO_TESTS_FORCE_NO_PIPENV) { + $Env:QUARTO_TESTS_FORCE_NO_VENV = $Env:QUARTO_TESTS_FORCE_NO_PIPENV +} +If ($null -eq $Env:QUARTO_TESTS_FORCE_NO_VENV) { # Save possible activated virtualenv for later restauration $OLD_VIRTUAL_ENV=$VIRTUAL_ENV - Write-Host "> Activating virtualenv for Python tests in Quarto" - . "$(pipenv --venv)/Scripts/activate.ps1" + Write-Host "> Activating virtualenv from .venv for Python tests in Quarto" + . $(Join-Path $QUARTO_ROOT "tests" ".venv/Scripts/activate.ps1") Write-Host "> Using Python from " -NoNewline; Write-Host "$((gcm python).Source)" -ForegroundColor Blue; Write-Host "> VIRTUAL_ENV: " -NoNewline; Write-Host "$($env:VIRTUAL_ENV)" -ForegroundColor Blue; $quarto_venv_activated = $true diff --git a/tests/run-tests.sh b/tests/run-tests.sh index 7997f8a45f0..29becd9e72c 100755 --- a/tests/run-tests.sh +++ b/tests/run-tests.sh @@ -33,13 +33,17 @@ then fi # Activating python virtualenv -# set QUARTO_TESTS_FORCE_NO_PIPENV env var to not activate the virtualenv managed by pipenv for the project -if [[ -z $QUARTO_TESTS_FORCE_NO_PIPENV ]] +# set QUARTO_TESTS_FORCE_NO_VENV env var to not activate the virtualenv located in the project +# QUARTO_TESTS_FORCE_NO_PIPENV is there for backward compatibility +if [[ -z $QUARTO_TESTS_FORCE_NO_VENV && -n 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