diff --git a/renderings/_quarto.yml b/renderings/_quarto.yml index 3686896..ce4b85e 100644 --- a/renderings/_quarto.yml +++ b/renderings/_quarto.yml @@ -9,7 +9,7 @@ website: - bokeh.qmd - flextable.qmd - ggiraph.qmd - - ggplot.qmd + - ggplot2.qmd - great-tables.qmd - gt.qmd - heatmaply.qmd diff --git a/renderings/ggiraph.qmd b/renderings/ggiraph.qmd index b1f8419..b5c37be 100644 --- a/renderings/ggiraph.qmd +++ b/renderings/ggiraph.qmd @@ -13,8 +13,8 @@ library(quarto) library(ggplot2) library(ggiraph) -light_theme <- theme_brand_ggplot("light-brand.yml") -dark_theme <- theme_brand_ggplot("dark-brand.yml") +light_theme <- theme_brand_ggplot2("light-brand.yml") +dark_theme <- theme_brand_ggplot2("dark-brand.yml") ``` ```{r} diff --git a/renderings/ggplot.qmd b/renderings/ggplot2.qmd similarity index 73% rename from renderings/ggplot.qmd rename to renderings/ggplot2.qmd index 446f394..52d4364 100644 --- a/renderings/ggplot.qmd +++ b/renderings/ggplot2.qmd @@ -1,10 +1,10 @@ --- -title: ggplot +title: ggplot2 keep-md: true format: html: code-tools: - source: https://github.com/quarto-dev/quarto-examples/blob/main/renderings/ggplot.qmd + source: https://github.com/quarto-dev/quarto-examples/blob/main/renderings/ggplot2.qmd --- ```{r} @@ -13,8 +13,8 @@ format: library(quarto) library(ggplot2) -light_theme <- theme_brand_ggplot("light-brand.yml") -dark_theme <- theme_brand_ggplot("dark-brand.yml") +light_theme <- theme_brand_ggplot2("light-brand.yml") +dark_theme <- theme_brand_ggplot2("dark-brand.yml") ``` ```{r} diff --git a/renderings/pyproject.toml b/renderings/pyproject.toml index d672f16..eb560eb 100644 --- a/renderings/pyproject.toml +++ b/renderings/pyproject.toml @@ -1,5 +1,5 @@ [project] -name = "quarto-light-dark-experiments" +name = "quarto-examples-renderings" version = "0.1.0" description = "Add your description here" readme = "README.md" @@ -8,13 +8,14 @@ dependencies = [ "altair>=5.5.0", "bokeh>=3.6.3", "bokeh-sampledata>=2024.2", + "brand-yml>=0.1.1", "great-tables>=0.16.1", "jupyter>=1.1.1", "matplotlib>=3.10.0", "plotly>6", "plotnine>=0.14.5", "pygal>=3.0.5", - "quarto>=0.2.0", + "quarto", "scikit-learn>=1.6.1", "seaborn>=0.13.2", "vega-datasets>=0.9.0", diff --git a/renderings/renv.lock b/renderings/renv.lock new file mode 100644 index 0000000..32232f2 --- /dev/null +++ b/renderings/renv.lock @@ -0,0 +1,6101 @@ +{ + "R": { + "Version": "4.3.2", + "Repositories": [ + { + "Name": "CRAN", + "URL": "https://repo.miserver.it.umich.edu/cran" + } + ] + }, + "Packages": { + "DBI": { + "Package": "DBI", + "Version": "1.2.2", + "Source": "Repository", + "Title": "R Database Interface", + "Date": "2024-02-09", + "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", + "Description": "A database interface definition for communication between R and relational database management systems. 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Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.", + "License": "GPL-2 | GPL-3", + "LazyLoad": "yes", + "ByteCompile": "yes", + "URL": "https://github.com/truecluster/bit64", + "Encoding": "UTF-8", + "Repository": "CRAN", + "Repository/R-Forge/Project": "ff", + "Repository/R-Forge/Revision": "177", + "Repository/R-Forge/DateTimeStamp": "2018-08-17 17:45:18", + "NeedsCompilation": "yes" + }, + "bitops": { + "Package": "bitops", + "Version": "1.0-9", + "Source": "Repository", + "Date": "2024-10-03", + "Authors@R": "c( person(\"Steve\", \"Dutky\", role = \"aut\", email = \"sdutky@terpalum.umd.edu\", comment = \"S original; then (after MM's port) revised and modified\"), person(\"Martin\", \"Maechler\", role = c(\"cre\", \"aut\"), email = \"maechler@stat.math.ethz.ch\", comment = c(\"Initial R port; tweaks\", ORCID = \"0000-0002-8685-9910\")))", + "Title": "Bitwise Operations", + "Description": "Functions for bitwise operations on integer vectors.", + "License": "GPL (>= 2)", + "URL": "https://github.com/mmaechler/R-bitops", + "BugReports": "https://github.com/mmaechler/R-bitops/issues", + "NeedsCompilation": "yes", + "Author": "Steve Dutky [aut] (S original; then (after MM's port) revised and modified), Martin Maechler [cre, aut] (Initial R port; tweaks, )", + "Maintainer": "Martin Maechler ", + "Repository": "RSPM", + "Encoding": "UTF-8" + }, + "blob": { + "Package": "blob", + "Version": "1.2.4", + "Source": "Repository", + "Title": "A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Description": "R's raw vector is useful for storing a single binary object. What if you want to put a vector of them in a data frame? The 'blob' package provides the blob object, a list of raw vectors, suitable for use as a column in data frame.", + "License": "MIT + file LICENSE", + "URL": "https://blob.tidyverse.org, https://github.com/tidyverse/blob", + "BugReports": "https://github.com/tidyverse/blob/issues", + "Imports": [ + "methods", + "rlang", + "vctrs (>= 0.2.1)" + ], + "Suggests": [ + "covr", + "crayon", + "pillar (>= 1.2.1)", + "testthat" + ], + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "false", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Kirill Müller [cre], RStudio [cph, fnd]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" + }, + "broom": { + "Package": "broom", + "Version": "1.0.8", + "Source": "Repository", + "Type": "Package", + "Title": "Convert Statistical Objects into Tidy Tibbles", + "Authors@R": "c(person(given = \"David\", family = 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Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".", + "Maintainer": "Martin Maechler ", + "Authors@R": "c(person(\"Martin\",\"Maechler\", role = c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) ,person(\"Peter\", \"Rousseeuw\", role=\"aut\", email=\"peter.rousseeuw@kuleuven.be\", comment = c(\"Fortran original\", ORCID = \"0000-0002-3807-5353\")) ,person(\"Anja\", \"Struyf\", role=\"aut\", comment= \"S original\") ,person(\"Mia\", \"Hubert\", role=\"aut\", email= \"Mia.Hubert@uia.ua.ac.be\", comment = c(\"S original\", ORCID = \"0000-0001-6398-4850\")) ,person(\"Kurt\", \"Hornik\", role=c(\"trl\", \"ctb\"), email=\"Kurt.Hornik@R-project.org\", comment=c(\"port to R; maintenance(1999-2000)\", ORCID=\"0000-0003-4198-9911\")) ,person(\"Matthias\", \"Studer\", role=\"ctb\") ,person(\"Pierre\", \"Roudier\", role=\"ctb\") ,person(\"Juan\", \"Gonzalez\", role=\"ctb\") ,person(\"Kamil\", \"Kozlowski\", role=\"ctb\") ,person(\"Erich\", \"Schubert\", role=\"ctb\", comment = c(\"fastpam options for pam()\", ORCID = \"0000-0001-9143-4880\")) ,person(\"Keefe\", \"Murphy\", role=\"ctb\", comment = \"volume.ellipsoid({d >= 3})\") #not yet ,person(\"Fischer-Rasmussen\", \"Kasper\", role = \"ctb\", comment = \"Gower distance for CLARA\") )", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ + "graphics", + "grDevices", + "stats", + "utils" + ], + "Suggests": [ + "MASS", + "Matrix" + ], + "SuggestsNote": "MASS: two examples using cov.rob() and mvrnorm(); Matrix tools for testing", + "Enhances": [ + "mvoutlier", + "fpc", + "ellipse", + "sfsmisc" + ], + "EnhancesNote": "xref-ed in man/*.Rd", + "LazyLoad": "yes", + "LazyData": "yes", + "ByteCompile": "yes", + "BuildResaveData": "no", + "License": "GPL (>= 2)", + "URL": "https://svn.r-project.org/R-packages/trunk/cluster/", + "NeedsCompilation": "yes", + "Author": "Martin Maechler [aut, cre] (), Peter Rousseeuw [aut] (Fortran original, ), Anja Struyf [aut] (S original), Mia Hubert [aut] (S original, ), Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000), ), Matthias Studer [ctb], Pierre Roudier [ctb], Juan Gonzalez [ctb], Kamil Kozlowski [ctb], Erich Schubert [ctb] (fastpam options for pam(), ), Keefe Murphy [ctb] (volume.ellipsoid({d >= 3}))", + "Repository": "CRAN" + }, + "codetools": { + "Package": "codetools", + "Version": "0.2-20", + "Source": "Repository", + "Priority": "recommended", + "Author": "Luke Tierney ", + "Description": "Code analysis tools for R.", + "Title": "Code Analysis Tools for R", + "Depends": [ + "R (>= 2.1)" + ], + "Maintainer": "Luke Tierney ", + "URL": "https://gitlab.com/luke-tierney/codetools", + "License": "GPL", + "NeedsCompilation": "no", + "Repository": "CRAN" + }, + "colorspace": { + "Package": "colorspace", + "Version": "2.1-1", + "Source": "Repository", + "Date": "2024-07-26", + "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes", + "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", + "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. 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(2020, Journal of Statistical Software, ).", + "Depends": [ + "R (>= 3.0.0)", + "methods" + ], + "Imports": [ + "graphics", + "grDevices", + "stats" + ], + "Suggests": [ + "datasets", + "utils", + "KernSmooth", + "MASS", + "kernlab", + "mvtnorm", + "vcd", + "tcltk", + "shiny", + "shinyjs", + "ggplot2", + "dplyr", + "scales", + "grid", + "png", + "jpeg", + "knitr", + "rmarkdown", + "RColorBrewer", + "rcartocolor", + "scico", + "viridis", + "wesanderson" + ], + "VignetteBuilder": "knitr", + "License": "BSD_3_clause + file LICENSE", + "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/", + "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html", + "LazyData": "yes", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "NeedsCompilation": "yes", + "Author": "Ross Ihaka [aut], Paul Murrell [aut] (), Kurt Hornik [aut] (), Jason C. Fisher [aut] (), Reto Stauffer [aut] (), Claus O. Wilke [aut] (), Claire D. 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This can make it hard to detect conflicts, particularly when they arise because a package update creates ambiguity that did not previously exist. 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Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", + "License": "MIT + file LICENSE", + "SystemRequirements": "libcurl (>= 7.62): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "URL": "https://jeroen.r-universe.dev/curl", + "BugReports": "https://github.com/jeroen/curl/issues", + "Suggests": [ + "spelling", + "testthat (>= 1.0.0)", + "knitr", + "jsonlite", + "later", + "rmarkdown", + "httpuv (>= 1.4.4)", + "webutils" + ], + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.0.0)" + ], + "RoxygenNote": "7.3.2.9000", + "Encoding": "UTF-8", + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "data.table": { + "Package": "data.table", + "Version": "1.17.0", + "Source": "Repository", + "Title": "Extension of `data.frame`", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ + "methods" + ], + "Suggests": [ + "bit64 (>= 4.0.0)", + "bit (>= 4.0.4)", + "R.utils", + "xts", + "zoo (>= 1.8-1)", + "yaml", + "knitr", + "markdown" + ], + "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.", + "License": "MPL-2.0 | file LICENSE", + "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table", + "BugReports": "https://github.com/Rdatatable/data.table/issues", + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "ByteCompile": "TRUE", + "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\"), person(\"Michael\",\"Chirico\", role=\"aut\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\", role=\"aut\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", 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role=\"ctb\"), person(\"Michael\",\"Czekanski\", role=\"ctb\"), person(\"Dmitry\", \"Shemetov\", role=\"ctb\"), person(\"Nitish\", \"Jha\", role=\"ctb\"), person(\"Joshua\", \"Wu\", role=\"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role=\"ctb\"), person(\"Anirban\", \"Chetia\", role=\"ctb\"), person(\"Doris\", \"Amoakohene\", role=\"ctb\"), person(\"Angel\", \"Feliz\", role=\"ctb\"), person(\"Michael\",\"Young\", role=\"ctb\"), person(\"Mark\", \"Seeto\", role=\"ctb\"), person(\"Philippe\", \"Grosjean\", role=\"ctb\"), person(\"Vincent\", \"Runge\", role=\"ctb\"), person(\"Christian\", \"Wia\", role=\"ctb\"), person(\"Elise\", \"Maigné\", role=\"ctb\"), person(\"Vincent\", \"Rocher\", role=\"ctb\"), person(\"Vijay\", \"Lulla\", role=\"ctb\"), person(\"Aljaž\", \"Sluga\", role=\"ctb\"), person(\"Bill\", \"Evans\", role=\"ctb\") )", + "NeedsCompilation": "yes", + "Author": "Tyson Barrett [aut, cre] (), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (), Toby Hocking [aut] (), Benjamin Schwendinger [aut] (), Ivan Krylov [aut] (), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb], @marc-outins [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb]", + "Maintainer": "Tyson Barrett ", + "Repository": "CRAN" + }, + "dbplyr": { + "Package": "dbplyr", + "Version": "2.5.0", + "Source": "Repository", + "Type": "Package", + "Title": "A 'dplyr' Back End for Databases", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Edgar\", \"Ruiz\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames. Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author.", + "License": "MIT + file LICENSE", + "URL": "https://dbplyr.tidyverse.org/, https://github.com/tidyverse/dbplyr", + "BugReports": "https://github.com/tidyverse/dbplyr/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Imports": [ + "blob (>= 1.2.0)", + "cli (>= 3.6.1)", + "DBI (>= 1.1.3)", + "dplyr (>= 1.1.2)", + "glue (>= 1.6.2)", + "lifecycle (>= 1.0.3)", + "magrittr", + "methods", + "pillar (>= 1.9.0)", + "purrr (>= 1.0.1)", + "R6 (>= 2.2.2)", + "rlang (>= 1.1.1)", + "tibble (>= 3.2.1)", + "tidyr (>= 1.3.0)", + "tidyselect (>= 1.2.1)", + "utils", + "vctrs (>= 0.6.3)", + "withr (>= 2.5.0)" + ], + "Suggests": [ + "bit64", + "covr", + "knitr", + "Lahman", + "nycflights13", + "odbc (>= 1.4.2)", + "RMariaDB (>= 1.2.2)", + "rmarkdown", + "RPostgres (>= 1.4.5)", + "RPostgreSQL", + "RSQLite (>= 2.3.1)", + "testthat (>= 3.1.10)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "TRUE", + "Encoding": "UTF-8", + "Language": "en-gb", + "RoxygenNote": "7.3.1", + "Collate": "'db-sql.R' 'utils-check.R' 'import-standalone-types-check.R' 'import-standalone-obj-type.R' 'utils.R' 'sql.R' 'escape.R' 'translate-sql-cut.R' 'translate-sql-quantile.R' 'translate-sql-string.R' 'translate-sql-paste.R' 'translate-sql-helpers.R' 'translate-sql-window.R' 'translate-sql-conditional.R' 'backend-.R' 'backend-access.R' 'backend-hana.R' 'backend-hive.R' 'backend-impala.R' 'verb-copy-to.R' 'backend-mssql.R' 'backend-mysql.R' 'backend-odbc.R' 'backend-oracle.R' 'backend-postgres.R' 'backend-postgres-old.R' 'backend-redshift.R' 'backend-snowflake.R' 'backend-spark-sql.R' 'backend-sqlite.R' 'backend-teradata.R' 'build-sql.R' 'data-cache.R' 'data-lahman.R' 'data-nycflights13.R' 'db-escape.R' 'db-io.R' 'db.R' 'dbplyr.R' 'explain.R' 'ident.R' 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Maximilian Girlich [aut], Edgar Ruiz [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "RSPM" + }, + "dendextend": { + "Package": "dendextend", + "Version": "1.19.0", + "Source": "Repository", + "Type": "Package", + "Title": "Extending 'dendrogram' Functionality in R", + "Date": "2024-11-15", + "Authors@R": "c(person(\"Tal\", \"Galili\", role = c(\"aut\", \"cre\", \"cph\"), email = \"tal.galili@gmail.com\", comment = \"https://www.r-statistics.com\"), person(\"Yoav\", \"Benjamini\", email = \"ybenja@tau.ac.il\",role = \"ths\"), person(\"Gavin\", \"Simpson\", role = \"ctb\"), person(\"Gregory\",\"Jefferis\", role = c(\"aut\", \"ctb\"), email = \"jefferis@gmail.com\", comment =\"imported code from his dendroextras package\"), person(\"Marco\", \"Gallotta\", role = \"ctb\", comment = \"a.k.a: marcog\") , person(\"Johan\", \"Renaudie\", role = \"ctb\", comment = \"https://github.com/plannapus\"), person(\"The R Core Team\", role = \"ctb\", comment = \"Thanks for the Infastructure, and code in the examples\"), person(\"Kurt\", \"Hornik\", role = \"ctb\"), person(\"Uwe\", \"Ligges\", role = \"ctb\"), person(\"Andrej-Nikolai\", \"Spiess\", role = \"ctb\"), person(\"Steve\", \"Horvath\",email = \"SHorvath@mednet.ucla.edu\", role = \"ctb\"), person(\"Peter\", \"Langfelder\",email = \"Peter.Langfelder@gmail.com\", role = \"ctb\"), person(\"skullkey\", role = \"ctb\"), person(\"Mark\", \"Van Der Loo\", email = \"mark.vanderloo@gmail.com\", comment = \"https://github.com/markvanderloo d3dendrogram\", role = \"ctb\"), person(\"Andrie\", \"de Vries\", email = \"apdevries@gmail.com\", comment = \"ggdendro author\", role = \"ctb\"), person(\"Zuguang\", \"Gu\", email = \"z.gu@dkfz-heidelberg.de\", comment = \"circlize author\", role = \"ctb\"), person(\"Cath\", comment = \"https://github.com/CathG\", role = \"ctb\"), person(\"John\", \"Ma\", comment = \"https://github.com/JohnMCMa\", role = \"ctb\"), person(\"Krzysiek\", \"G\", comment = \"https://github.com/storaged\", role = \"ctb\"), person(\"Manuela\", \"Hummel\", email = \"m.hummel@dkfz.de\", comment = \"https://github.com/hummelma\", role = \"ctb\"), person(\"Chase\", \"Clark\", comment = \"https://github.com/chasemc\", role = \"ctb\"), person(\"Lucas\", \"Graybuck\", comment = \"https://github.com/hypercompetent\", role = \"ctb\"), person(\"jdetribol\", comment = \"https://github.com/jdetribol\", role = \"ctb\"), person(\"Ben\", \"Ho\", role = \"ctb\", email = \"ben.ho@sickkids.ca\", comment = \"https://github.com/SplitInf\"), person(\"Samuel\", \"Perreault\", role = \"ctb\", email = \"samuel.perreault.3@ulaval.ca\", comment = \"https://github.com/samperochkin\"), person(\"Christian\", \"Hennig\", role = \"ctb\", email = \"c.hennig@ucl.ac.uk\", comment = \"http://www.homepages.ucl.ac.uk/~ucakche/\"), person(\"David\", \"Bradley\", role = \"ctb\", comment = \"https://github.com/DBradley27\"), person(\"Houyun\", \"Huang\", role = \"ctb\", email = 'houyunhuang@163.com', comment = \"https://github.com/houyunhuang\"), person(\"Patrick\", \"Schupp\", role = \"ctb\", email = 'pschupp@sonic.net', comment = \"https://github.com/pschupp\"), person(\"Alec\", \"Buetow\", role = \"ctb\", email = 'alecbuetow@gmail.com', comment = \"https://github.com/alecbuetow\") )", + "Description": "Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.", + "Depends": [ + "R (>= 3.0.0)" + ], + "Imports": [ + "utils", + "stats", + "datasets", + "magrittr (>= 1.0.1)", + "ggplot2", + "viridis" + ], + "Suggests": [ + "knitr", + "rmarkdown", + "testthat", + "seriation", + "colorspace", + "ape", + "microbenchmark", + "gplots", + "heatmaply", + "dynamicTreeCut", + "pvclust", + "corrplot", + "DendSer", + "MASS", + "cluster", + "fpc", + "circlize (>= 0.2.5)", + "covr" + ], + "Enhances": [ + "ggdendro", + "dendroextras", + "Hmisc", + "data.table", + "rpart", + "WGCNA", + "moduleColor", + "distory", + "phangorn", + "zoo" + ], + "VignetteBuilder": "knitr", + "LazyData": "true", + "License": "GPL-2 | GPL-3", + "URL": "https://talgalili.github.io/dendextend/, https://github.com/talgalili/dendextend/, https://cran.r-project.org/package=dendextend, https://www.r-statistics.com/tag/dendextend/, https://doi.org/10.1093/bioinformatics/btv428", + "BugReports": "https://github.com/talgalili/dendextend/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/), David Bradley [ctb] (https://github.com/DBradley27), Houyun Huang [ctb] (https://github.com/houyunhuang), Patrick Schupp [ctb] (https://github.com/pschupp), Alec Buetow [ctb] (https://github.com/alecbuetow)", + "Maintainer": "Tal Galili ", + "Repository": "CRAN" + }, + "digest": { + "Package": "digest", + "Version": "0.6.37", + "Source": "Repository", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\"), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\"), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = 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The \"v4\" refers to the fact that the Sheets API is currently at version 4. 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With its progressive approach, we can construct display tables with a cohesive set of table parts. Table values can be formatted using any of the included formatting functions. Footnotes and cell styles can be precisely added through a location targeting system. The way in which 'gt' handles things for you means that you don't often have to worry about the fine details.", + "License": "MIT + file LICENSE", + "URL": "https://gt.rstudio.com, https://github.com/rstudio/gt", + "BugReports": "https://github.com/rstudio/gt/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "base64enc (>= 0.1-3)", + "bigD (>= 0.2)", + "bitops (>= 1.0-7)", + "cli (>= 3.6.3)", + "commonmark (>= 1.9.1)", + "dplyr (>= 1.1.4)", + "fs (>= 1.6.4)", + "glue (>= 1.8.0)", + "htmltools (>= 0.5.8.1)", + "htmlwidgets (>= 1.6.4)", + "juicyjuice (>= 0.1.0)", + "magrittr (>= 2.0.3)", + "markdown (>= 1.13)", + "reactable (>= 0.4.4)", + "rlang (>= 1.1.4)", + "sass (>= 0.4.9)", + "scales (>= 1.3.0)", + "tidyselect (>= 1.2.1)", + "vctrs", + "xml2 (>= 1.3.6)" + ], + "Suggests": [ + "fontawesome (>= 0.5.2)", + "ggplot2", + "grid", + "gtable (>= 0.3.6)", + "katex (>= 1.4.1)", + "knitr", + "lubridate", + "magick", + "paletteer", + "RColorBrewer", + "rmarkdown (>= 2.20)", + "rsvg", + "rvest", + "shiny (>= 1.9.1)", + "testthat (>= 3.1.9)", + "tidyr (>= 1.0.0)", + "webshot2 (>= 0.1.0)", + "withr" + ], + "Config/Needs/coverage": "officer", + "Config/Needs/website": "quarto", + "ByteCompile": "true", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Richard Iannone [aut, cre] (), Joe Cheng [aut], Barret Schloerke [aut] (), Ellis Hughes [aut] (), Alexandra Lauer [aut] (), JooYoung Seo [aut] (), Ken Brevoort [aut] (), Olivier Roy [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Richard Iannone ", + "Repository": "CRAN" + }, + "gtable": { + "Package": "gtable", + "Version": "0.3.6", + "Source": "Repository", + "Title": "Arrange 'Grobs' in Tables", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.", + "License": "MIT + file LICENSE", + "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable", + "BugReports": "https://github.com/r-lib/gtable/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ + "cli", + "glue", + "grid", + "lifecycle", + "rlang (>= 1.1.0)", + "stats" + ], + "Suggests": [ + "covr", + "ggplot2", + "knitr", + "profvis", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2024-10-25", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, + "haven": { + "Package": "haven", + "Version": "2.5.4", + "Source": "Repository", + "Title": "Import and Export 'SPSS', 'Stata' and 'SAS' Files", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Evan\", \"Miller\", role = c(\"aut\", \"cph\"), comment = \"Author of included ReadStat code\"), person(\"Danny\", \"Smith\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Import foreign statistical formats into R via the embedded 'ReadStat' C library, .", + "License": "MIT + file LICENSE", + "URL": "https://haven.tidyverse.org, https://github.com/tidyverse/haven, https://github.com/WizardMac/ReadStat", + "BugReports": "https://github.com/tidyverse/haven/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Imports": [ + "cli (>= 3.0.0)", + "forcats (>= 0.2.0)", + "hms", + "lifecycle", + "methods", + "readr (>= 0.1.0)", + "rlang (>= 0.4.0)", + "tibble", + "tidyselect", + "vctrs (>= 0.3.0)" + ], + "Suggests": [ + "covr", + "crayon", + "fs", + "knitr", + "pillar (>= 1.4.0)", + "rmarkdown", + "testthat (>= 3.0.0)", + "utf8" + ], + "LinkingTo": [ + "cpp11" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "SystemRequirements": "GNU make, zlib: zlib1g-dev (deb), zlib-devel (rpm)", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre], Evan Miller [aut, cph] (Author of included ReadStat code), Danny Smith [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "RSPM" + }, + "heatmaply": { + "Package": "heatmaply", + "Version": "1.5.0", + "Source": "Repository", + "Type": "Package", + "Title": "Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'", + "Date": "2023-10-06", + "Authors@R": "c( person(\"Tal\", \"Galili\", role = c(\"aut\", \"cre\", \"cph\"), email = \"tal.galili@gmail.com\", comment = \"https://www.r-statistics.com\"), person(\"Alan\", \"O'Callaghan\", comment = \"https://github.com/Alanocallaghan\",role = \"aut\"), person(\"Jonathan\", \"Sidi\", email = \"yonis@metrumrg.com\", comment = \"https://github.com/yonicd\",role = \"ctb\"), person(\"Jaehyun\", \"Joo\", comment = \"https://github.com/jaehyunjoo\",role = \"ctb\"), person(\"Yoav\", \"Benjamini\", email = \"ybenja@tau.ac.il\",role = \"ths\"))", + "Description": "Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive 'heatmaps' allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. 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Currently it supports LaTeX and HTML output. 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Wilke [aut] (Original author, ), Thomas Lin Pedersen [aut] ()", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "iterators": { + "Package": "iterators", + "Version": "1.0.14", + "Source": "Repository", + "Type": "Package", + "Title": "Provides Iterator Construct", + "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Revolution\", \"Analytics\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"))", + "Description": "Support for iterators, which allow a programmer to traverse through all the elements of a vector, list, or other collection of data.", + "URL": "https://github.com/RevolutionAnalytics/iterators", + "Depends": [ + "R (>= 2.5.0)", + "utils" + ], + "Suggests": [ + "RUnit", + "foreach" + ], + "License": "Apache License (== 2.0)", + "NeedsCompilation": "no", + "Author": "Folashade Daniel [cre], Revolution Analytics [aut, cph], Steve Weston [aut]", + "Maintainer": "Folashade Daniel ", + "Repository": "CRAN" + }, + "jquerylib": { + "Package": "jquerylib", + "Version": "0.1.4", + "Source": "Repository", + "Title": "Obtain 'jQuery' as an HTML Dependency Object", + "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", + "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). 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Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.", + "Suggests": [ + "httr", + "vctrs", + "testthat", + "knitr", + "rmarkdown", + "R.rsp", + "sf" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", + "Repository": "CRAN" + }, + "juicyjuice": { + "Package": "juicyjuice", + "Version": "0.1.0", + "Source": "Repository", + "Title": "Inline CSS Properties into HTML Tags Using 'juice'", + "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"riannone@me.com\", c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Automattic\", role = c(\"cph\"), comment = \"juice library\"), person(\"juice contributors\", role = c(\"ctb\"), comment = \"juice library\") )", + "Description": "There are occasions where you need a piece of HTML with integrated styles. A prime example of this is HTML email. This transformation involves moving the CSS and associated formatting instructions from the style block in the head of your document into the body of the HTML. Many prominent email clients require integrated styles in HTML email; otherwise a received HTML email will be displayed without any styling. This package will quickly and precisely perform these CSS transformations when given HTML text and it does so by using the JavaScript 'juice' library.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/rich-iannone/juicyjuice", + "BugReports": "https://github.com/rich-iannone/juicyjuice/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.1", + "Imports": [ + "V8 (>= 4.2.0)" + ], + "Suggests": [ + "testthat (>= 3.0.0)" + ], + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Richard Iannone [aut, cre, cph] (), Automattic [cph] (juice library), juice contributors [ctb] (juice library)", + "Maintainer": "Richard Iannone ", + "Repository": "RSPM" + }, + "knitr": { + "Package": "knitr", + "Version": "1.50", + "Source": "Repository", + "Type": "Package", + "Title": "A General-Purpose Package for Dynamic Report Generation in R", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = 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The package focuses on tabular and graphical reporting from R; it also provides two functions that let users get document content into data objects. A set of functions lets add and remove images, tables and paragraphs of text in new or existing documents. 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Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/openssl", + "BugReports": "https://github.com/jeroen/openssl/issues", + "SystemRequirements": "OpenSSL >= 1.0.2", + "VignetteBuilder": "knitr", + "Imports": [ + "askpass" + ], + "Suggests": [ + "curl", + "testthat (>= 2.1.0)", + "digest", + "knitr", + "rmarkdown", + "jsonlite", + "jose", + "sodium" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Oliver Keyes [ctb]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "palmerpenguins": { + "Package": "palmerpenguins", + "Version": "0.1.1", + "Source": "Repository", + "Title": "Palmer Archipelago (Antarctica) Penguin Data", + "Date": "2022-08-12", + "Authors@R": "c( person(given = \"Allison\", family = \"Horst\", role = c(\"aut\", \"cre\"), email = \"ahorst@ucsb.edu\", comment = c(ORCID = \"0000-0002-6047-5564\")), person(given = \"Alison\", family = \"Hill\", role = c(\"aut\"), email = \"apresstats@gmail.com\", comment = c(ORCID = \"0000-0002-8082-1890\")), person(given = \"Kristen\", family = \"Gorman\", role = c(\"aut\"), email = \"kbgorman@alaska.edu\", comment = c(ORCID = \"0000-0002-0258-9264\")) )", + "Description": "Size measurements, clutch observations, and blood isotope ratios for adult foraging Adélie, Chinstrap, and Gentoo penguins observed on islands in the Palmer Archipelago near Palmer Station, Antarctica. 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The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.", + "License": "MIT + file LICENSE", + "URL": "https://ragg.r-lib.org, https://github.com/r-lib/ragg", + "BugReports": "https://github.com/r-lib/ragg/issues", + "Imports": [ + "systemfonts (>= 1.0.3)", + "textshaping (>= 0.3.0)" + ], + "Suggests": [ + "covr", + "graphics", + "grid", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "systemfonts", + "textshaping" + ], + "Config/Needs/website": "ggplot2, devoid, magick, bench, tidyr, ggridges, hexbin, sessioninfo, pkgdown, tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "freetype2, libpng, libtiff, libjpeg", + "Config/testthat/edition": "3", + "Config/build/compilation-database": "true", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit, PBC [cph, fnd]", + "Repository": "CRAN" + }, + "rappdirs": { + "Package": "rappdirs", + "Version": "0.3.3", + "Source": "Repository", + "Type": "Package", + "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs", + "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = c(\"trl\", \"cre\", \"cph\"), email = \"hadley@rstudio.com\"), person(given = \"RStudio\", role = \"cph\"), person(given = \"Sridhar\", family = \"Ratnakumar\", role = \"aut\"), person(given = \"Trent\", family = \"Mick\", role = \"aut\"), person(given = \"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(given = \"Eddy\", family = \"Petrisor\", role = \"ctb\"), person(given = \"Trevor\", family = \"Davis\", role = c(\"trl\", \"aut\")), person(given = \"Gabor\", family = \"Csardi\", role = \"ctb\"), person(given = \"Gregory\", family = \"Jefferis\", role = \"ctb\"))", + "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' () to R.", + "License": "MIT + file LICENSE", + "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs", + "BugReports": "https://github.com/r-lib/rappdirs/issues", + "Depends": [ + "R (>= 3.2)" + ], + "Suggests": [ + "roxygen2", + "testthat (>= 3.0.0)", + "covr", + "withr" + ], + "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, RStudio. See file LICENSE for details.", + "Encoding": "UTF-8", + "RoxygenNote": "7.1.1", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "raster": { + "Package": "raster", + "Version": "3.6-31", + "Source": "Repository", + "Type": "Package", + "Title": "Geographic Data Analysis and Modeling", + "Date": "2025-01-16", + "Imports": [ + "Rcpp", + "methods", + "terra (>= 1.8-5)" + ], + "LinkingTo": [ + "Rcpp" + ], + "Depends": [ + "sp (>= 1.4-5)", + "R (>= 3.5.0)" + ], + "Suggests": [ + "ncdf4", + "igraph", + "tcltk", + "parallel", + "rasterVis", + "MASS", + "sf", + "tinytest", + "gstat", + "fields", + "exactextractr" + ], + "Description": "Reading, writing, manipulating, analyzing and modeling of spatial data. 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Hijmans [cre, aut] (), Jacob van Etten [ctb], Michael Sumner [ctb], Joe Cheng [ctb], Dan Baston [ctb], Andrew Bevan [ctb], Roger Bivand [ctb], Lorenzo Busetto [ctb], Mort Canty [ctb], Ben Fasoli [ctb], David Forrest [ctb], Aniruddha Ghosh [ctb], Duncan Golicher [ctb], Josh Gray [ctb], Jonathan A. Greenberg [ctb], Paul Hiemstra [ctb], Kassel Hingee [ctb], Alex Ilich [ctb], Institute for Mathematics Applied Geosciences [cph], Charles Karney [ctb], Matteo Mattiuzzi [ctb], Steven Mosher [ctb], Babak Naimi [ctb], Jakub Nowosad [ctb], Edzer Pebesma [ctb], Oscar Perpinan Lamigueiro [ctb], Etienne B. Racine [ctb], Barry Rowlingson [ctb], Ashton Shortridge [ctb], Bill Venables [ctb], Rafael Wueest [ctb]", + "Maintainer": "Robert J. 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Provides an HTML widget that can be used in 'R Markdown' or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.", + "License": "MIT + file LICENSE", + "URL": "https://glin.github.io/reactable/, https://github.com/glin/reactable", + "BugReports": "https://github.com/glin/reactable/issues", + "Depends": [ + "R (>= 3.1)" + ], + "Imports": [ + "digest", + "htmltools (>= 0.5.2)", + "htmlwidgets (>= 1.5.3)", + "jsonlite", + "reactR" + ], + "Suggests": [ + "covr", + "crosstalk", + "dplyr", + "fontawesome", + "knitr", + "leaflet", + "MASS", + "rmarkdown", + "shiny", + "sparkline", + "testthat", + "tippy", + "V8" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.2.1", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Greg Lin [aut, cre], Tanner Linsley [ctb, cph] (React Table library), Emotion team and other contributors [ctb, cph] (Emotion library), Kent Russell [ctb, cph] (reactR package), Ramnath Vaidyanathan [ctb, cph] (htmlwidgets package), Joe Cheng [ctb, cph] (htmlwidgets package), JJ Allaire [ctb, cph] (htmlwidgets package), Yihui Xie [ctb, cph] (htmlwidgets package), Kenton Russell [ctb, cph] (htmlwidgets package), Facebook, Inc. and its affiliates [ctb, cph] (React library), FormatJS [ctb, cph] (FormatJS libraries), Feross Aboukhadijeh, and other contributors [ctb, cph] (buffer library), Roman Shtylman [ctb, cph] (process library), James Halliday [ctb, cph] (stream-browserify library), Posit Software, PBC [fnd, cph]", + "Maintainer": "Greg Lin ", + "Repository": "RSPM" + }, + "readr": { + "Package": "readr", + "Version": "2.1.5", + "Source": "Repository", + "Title": "Read Rectangular Text Data", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )", + "Description": "The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf'). 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+ "VignetteBuilder": "knitr", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Joe Cheng [aut], Timothy Mastny [aut], Richard Iannone [aut] (), Barret Schloerke [aut] (), Carson Sievert [aut, cre] (), Christophe Dervieux [ctb] (), RStudio [cph, fnd], Sass Open Source Foundation [ctb, cph] (LibSass library), Greter Marcel [ctb, cph] (LibSass library), Mifsud Michael [ctb, cph] (LibSass library), Hampton Catlin [ctb, cph] (LibSass library), Natalie Weizenbaum [ctb, cph] (LibSass library), Chris Eppstein [ctb, cph] (LibSass library), Adams Joseph [ctb, cph] (json.cpp), Trifunovic Nemanja [ctb, cph] (utf8.h)", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" + }, + "scales": { + "Package": "scales", + "Version": "1.4.0", + "Source": "Repository", + "Title": "Scale Functions for Visualization", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", 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"UTF-8", + "LazyLoad": "yes", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, + "selectr": { + "Package": "selectr", + "Version": "0.4-2", + "Source": "Repository", + "Type": "Package", + "Title": "Translate CSS Selectors to XPath Expressions", + "Date": "2019-11-20", + "Authors@R": "c(person(\"Simon\", \"Potter\", role = c(\"aut\", \"trl\", \"cre\"), email = \"simon@sjp.co.nz\"), person(\"Simon\", \"Sapin\", role = \"aut\"), person(\"Ian\", \"Bicking\", role = \"aut\"))", + "License": "BSD_3_clause + file LICENCE", + "Depends": [ + "R (>= 3.0)" + ], + "Imports": [ + "methods", + "stringr", + "R6" + ], + "Suggests": [ + "testthat", + "XML", + "xml2" + ], + "URL": "https://sjp.co.nz/projects/selectr", + "BugReports": "https://github.com/sjp/selectr/issues", + "Description": "Translates a CSS3 selector into an equivalent XPath expression. This allows us to use CSS selectors when working with the XML package as it can only evaluate XPath expressions. Also provided are convenience functions useful for using CSS selectors on XML nodes. This package is a port of the Python package 'cssselect' ().", + "NeedsCompilation": "no", + "Author": "Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking [aut]", + "Maintainer": "Simon Potter ", + "Repository": "CRAN" + }, + "seriation": { + "Package": "seriation", + "Version": "1.5.7", + "Source": "Repository", + "Type": "Package", + "Title": "Infrastructure for Ordering Objects Using Seriation", + "Date": "2024-12-05", + "Authors@R": "c( person(\"Michael\", \"Hahsler\", role = c(\"aut\", \"cre\", \"cph\"), email = \"mhahsler@lyle.smu.edu\", comment = c(ORCID = \"0000-0003-2716-1405\")), person(\"Christian\", \"Buchta\", role = c(\"aut\", \"cph\")), person(\"Kurt\", \"Hornik\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"David\", \"Barnett\", role = c(\"ctb\")), person(\"Michael\", \"Brusco\", role = c(\"ctb\", \"cph\")), person(\"Michael\", \"Friendly\", role = c(\"ctb\")), person(\"Hans-Friedrich\", \"Koehn\", role = c(\"ctb\", \"cph\")), person(\"Fionn\", \"Murtagh\", role = c(\"ctb\", \"cph\")), person(\"Stephanie\", \"Stahl\", role = c(\"ctb\", \"cph\")))", + "Description": "Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) .", + "Classification/ACM": "G.1.6, G.2.1, G.4", + "URL": "https://github.com/mhahsler/seriation", + "BugReports": "https://github.com/mhahsler/seriation/issues", + "Depends": [ + "R (>= 2.14.0)" + ], + "Imports": [ + "ca", + "cluster", + "colorspace", + "foreach", + "gclus", + "grDevices", + "grid", + "MASS", + "qap", + "registry", + "stats", + "TSP", + "vegan" + ], + "Suggests": [ + "dbscan", + "DendSer", + "dendextend", + "doParallel", + "GA", + "ggplot2", + "keras", + "Rtsne", + "scales", + "smacof", + "tensorflow", + "testthat", + "umap" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "License": "GPL-3", + "Copyright": "The code in src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is Copyright (C) Michael Hahsler, Christian Buchta, and Kurt Hornik.", + "Collate": "'AAA_check_installed.R' 'AAA_color_palette.R' 'AAA_defaults.R' 'AAA_map.R' 'AAA_parameters.R' 'AAA_registry_criterion.R' 'AAA_registry_seriate.R' 'AAA_seriation-package.R' 'Chameleon.R' 'Irish.R' 'Munsingen.R' 'Psych24.R' 'SupremeCourt.R' 'Townships.R' 'VAT.R' 'Wood.R' 'Zoo.R' 'bertinplot.R' 'criterion.R' 'criterion.array.R' 'criterion.dist.R' 'criterion.matrix.R' 'dissplot.R' 'get_order.R' 'ggVAT.R' 'ggbertinplot.R' 'ggdissplot.R' 'hmap.R' 'gghmap.R' 'pimage.R' 'ggpimage.R' 'grid_helpers.R' 'lines_and_ordered_data.R' 'lle.R' 'permute.R' 'register_DendSer.R' 'register_GA.R' 'register_optics.R' 'register_smacof.R' 'register_tsne.R' 'register_umap.R' 'reorder.hclust.R' 'robinson.R' 'ser_dist.R' 'ser_permutation.R' 'ser_permutation_vector.R' 'ser_permutation_vector2matrix.R' 'seriate.R' 'seriate.dist.R' 'seriate.matrix.R' 'seriate.array.R' 'seriate.data.frame.R' 'seriate.table.R' 'seriate_AOE.R' 'seriate_ARSA_Branch-Bound.R' 'seriate_TSP.R' 'seriate_BEA.R' 'seriate_BK.R' 'seriate_CA.R' 'seriate_GSA.R' 'seriate_HC.R' 'seriate_LLE.R' 'seriate_MDS.R' 'seriate_Mean.R' 'seriate_PCA.R' 'seriate_QAP.R' 'seriate_R2E.R' 'seriate_SGD.R' 'seriate_SPIN.R' 'seriate_VAT.R' 'seriate_best.R' 'seriate_enumerate.R' 'seriate_heatmap.R' 'seriate_identity.R' 'seriate_random.R' 'seriate_reverse.R' 'seriate_spectral.R' 'seriate_vegan.R' 'uniscale.R'", + "NeedsCompilation": "yes", + "Author": "Michael Hahsler [aut, cre, cph] (), Christian Buchta [aut, cph], Kurt Hornik [aut, cph] (), David Barnett [ctb], Michael Brusco [ctb, cph], Michael Friendly [ctb], Hans-Friedrich Koehn [ctb, cph], Fionn Murtagh [ctb, cph], Stephanie Stahl [ctb, cph]", + "Maintainer": "Michael Hahsler ", + "Repository": "CRAN" + }, + "sp": { + "Package": "sp", + "Version": "2.1-4", + "Source": "Repository", + "Title": "Classes and Methods for Spatial Data", + "Authors@R": "c(person(\"Edzer\", \"Pebesma\", role = c(\"aut\", \"cre\"), email = \"edzer.pebesma@uni-muenster.de\"), person(\"Roger\", \"Bivand\", role = \"aut\", email = \"Roger.Bivand@nhh.no\"), person(\"Barry\", \"Rowlingson\", role = \"ctb\"), person(\"Virgilio\", \"Gomez-Rubio\", role = \"ctb\"), person(\"Robert\", \"Hijmans\", role = \"ctb\"), person(\"Michael\", \"Sumner\", role = \"ctb\"), person(\"Don\", \"MacQueen\", role = \"ctb\"), person(\"Jim\", \"Lemon\", role = \"ctb\"), person(\"Finn\", \"Lindgren\", role = \"ctb\"), person(\"Josh\", \"O'Brien\", role = \"ctb\"), person(\"Joseph\", \"O'Rourke\", role = \"ctb\"), person(\"Patrick\", \"Hausmann\", role = \"ctb\"))", + "Depends": [ + "R (>= 3.5.0)", + "methods" + ], + "Imports": [ + "utils", + "stats", + "graphics", + "grDevices", + "lattice", + "grid" + ], + "Suggests": [ + "RColorBrewer", + "gstat", + "deldir", + "knitr", + "rmarkdown", + "sf", + "terra", + "raster" + ], + "Description": "Classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc. From this version, 'rgdal', 'maptools', and 'rgeos' are no longer used at all, see for details.", + "License": "GPL (>= 2)", + "URL": "https://github.com/edzer/sp/ https://edzer.github.io/sp/", + "BugReports": "https://github.com/edzer/sp/issues", + "Collate": "bpy.colors.R AAA.R Class-CRS.R CRS-methods.R Class-Spatial.R Spatial-methods.R projected.R Class-SpatialPoints.R SpatialPoints-methods.R Class-SpatialPointsDataFrame.R SpatialPointsDataFrame-methods.R Class-SpatialMultiPoints.R SpatialMultiPoints-methods.R Class-SpatialMultiPointsDataFrame.R SpatialMultiPointsDataFrame-methods.R Class-GridTopology.R Class-SpatialGrid.R Class-SpatialGridDataFrame.R Class-SpatialLines.R SpatialLines-methods.R Class-SpatialLinesDataFrame.R SpatialLinesDataFrame-methods.R Class-SpatialPolygons.R Class-SpatialPolygonsDataFrame.R SpatialPolygons-methods.R SpatialPolygonsDataFrame-methods.R GridTopology-methods.R SpatialGrid-methods.R SpatialGridDataFrame-methods.R SpatialPolygons-internals.R point.in.polygon.R SpatialPolygons-displayMethods.R zerodist.R image.R stack.R bubble.R mapasp.R select.spatial.R gridded.R asciigrid.R spplot.R over.R spsample.R recenter.R dms.R gridlines.R spdists.R rbind.R flipSGDF.R chfids.R loadmeuse.R compassRose.R surfaceArea.R spOptions.R subset.R disaggregate.R sp_spat1.R merge.R aggregate.R elide.R sp2Mondrian.R", + "VignetteBuilder": "knitr", + "NeedsCompilation": "yes", + "Author": "Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb], Robert Hijmans [ctb], Michael Sumner [ctb], Don MacQueen [ctb], Jim Lemon [ctb], Finn Lindgren [ctb], Josh O'Brien [ctb], Joseph O'Rourke [ctb], Patrick Hausmann [ctb]", + "Maintainer": "Edzer Pebesma ", + "Repository": "CRAN" + }, + "stringi": { + "Package": "stringi", + "Version": "1.8.7", + "Source": "Repository", + "Date": "2025-03-27", + "Title": "Fast and Portable Character String Processing Facilities", + "Description": "A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at and the paper by Gagolewski (2022, ).", + "URL": "https://stringi.gagolewski.com/, https://github.com/gagolews/stringi, https://icu.unicode.org/", + "BugReports": "https://github.com/gagolews/stringi/issues", + "SystemRequirements": "ICU4C (>= 61, optional)", + "Type": "Package", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ + "tools", + "utils", + "stats" + ], + "Biarch": "TRUE", + "License": "file LICENSE", + "Authors@R": "c(person(given = \"Marek\", family = \"Gagolewski\", role = c(\"aut\", \"cre\", \"cph\"), email = \"marek@gagolewski.com\", comment = c(ORCID = \"0000-0003-0637-6028\")), person(given = \"Bartek\", family = \"Tartanus\", role = \"ctb\"), person(\"Unicode, Inc. and others\", role=\"ctb\", comment = \"ICU4C source code, Unicode Character Database\") )", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Marek Gagolewski [aut, cre, cph] (), Bartek Tartanus [ctb], Unicode, Inc. and others [ctb] (ICU4C source code, Unicode Character Database)", + "Maintainer": "Marek Gagolewski ", + "License_is_FOSS": "yes", + "Repository": "CRAN" + }, + "stringr": { + "Package": "stringr", + "Version": "1.5.1", + "Source": "Repository", + "Title": "Simple, Consistent Wrappers for Common String Operations", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with \"NA\"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.", + "License": "MIT + file LICENSE", + "URL": "https://stringr.tidyverse.org, https://github.com/tidyverse/stringr", + "BugReports": "https://github.com/tidyverse/stringr/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Imports": [ + "cli", + "glue (>= 1.6.1)", + "lifecycle (>= 1.0.3)", + "magrittr", + "rlang (>= 1.0.0)", + "stringi (>= 1.5.3)", + "vctrs (>= 0.4.0)" + ], + "Suggests": [ + "covr", + "dplyr", + "gt", + "htmltools", + "htmlwidgets", + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)", + "tibble" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre, cph], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "RSPM" + }, + "sys": { + "Package": "sys", + "Version": "3.4.3", + "Source": "Repository", + "Type": "Package", + "Title": "Powerful and Reliable Tools for Running System Commands in R", + "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"ctb\"))", + "Description": "Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. Supports clean interruption, timeout, background tasks, and streaming STDIN / STDOUT / STDERR over binary or text connections. Arguments on Windows automatically get encoded and quoted to work on different locales.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/sys", + "BugReports": "https://github.com/jeroen/sys/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.1.1", + "Suggests": [ + "unix (>= 1.4)", + "spelling", + "testthat" + ], + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Gábor Csárdi [ctb]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "systemfonts": { + "Package": "systemfonts", + "Version": "1.2.2", + "Source": "Repository", + "Type": "Package", + "Title": "System Native Font Finding", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Jeroen\", \"Ooms\", , \"jeroen@berkeley.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Devon\", \"Govett\", role = \"aut\", comment = \"Author of font-manager\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides system native access to the font catalogue. As font handling varies between systems it is difficult to correctly locate installed fonts across different operating systems. The 'systemfonts' package provides bindings to the native libraries on Windows, macOS and Linux for finding font files that can then be used further by e.g. graphic devices. The main use is intended to be from compiled code but 'systemfonts' also provides access from R.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/systemfonts, https://systemfonts.r-lib.org", + "BugReports": "https://github.com/r-lib/systemfonts/issues", + "Depends": [ + "R (>= 3.2.0)" + ], + "Suggests": [ + "covr", + "farver", + "graphics", + "knitr", + "rmarkdown", + "testthat (>= 2.1.0)" + ], + "LinkingTo": [ + "cpp11 (>= 0.2.1)" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "fontconfig, freetype2", + "Config/Needs/website": "tidyverse/tidytemplate", + "Imports": [ + "grid", + "jsonlite", + "lifecycle", + "tools", + "utils" + ], + "Config/build/compilation-database": "true", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [aut, cre] (), Jeroen Ooms [aut] (), Devon Govett [aut] (Author of font-manager), Posit, PBC [cph, fnd]", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, + "terra": { + "Package": "terra", + "Version": "1.8-10", + "Source": "Repository", + "Type": "Package", + "Title": "Spatial Data Analysis", + "Date": "2025-01-13", + "Depends": [ + "R (>= 3.5.0)" + ], + "Suggests": [ + "parallel", + "tinytest", + "ncdf4", + "sf (>= 0.9-8)", + "deldir", + "XML", + "leaflet (>= 2.2.1)", + "htmlwidgets" + ], + "LinkingTo": [ + "Rcpp" + ], + "Imports": [ + "methods", + "Rcpp (>= 1.0-10)" + ], + "SystemRequirements": "C++17, GDAL (>= 2.2.3), GEOS (>= 3.4.0), PROJ (>= 4.9.3), sqlite3", + "Encoding": "UTF-8", + "Language": "en-US", + "Maintainer": "Robert J. Hijmans ", + "Description": "Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).", + "License": "GPL (>= 3)", + "URL": "https://rspatial.org/, https://rspatial.github.io/terra/", + "BugReports": "https://github.com/rspatial/terra/issues/", + "LazyLoad": "yes", + "Authors@R": "c( person(\"Robert J.\", \"Hijmans\", role=c(\"cre\", \"aut\"), email=\"r.hijmans@gmail.com\", comment=c(ORCID=\"0000-0001-5872-2872\")), person(\"Roger\", \"Bivand\", role=\"ctb\", comment=c(ORCID=\"0000-0003-2392-6140\")), person(\"Michael\", \"Chirico\", role=\"ctb\"), person(\"Emanuele\", \"Cordano\", role=\"ctb\",comment=c(ORCID=\"0000-0002-3508-5898\")), person(\"Krzysztof\", \"Dyba\", role=\"ctb\", comment=c(ORCID=\"0000-0002-8614-3816\")), person(\"Edzer\", \"Pebesma\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8049-7069\")), person(\"Barry\", \"Rowlingson\", role=\"ctb\"), person(\"Michael D.\", \"Sumner\", role=\"ctb\"))", + "NeedsCompilation": "yes", + "Author": "Robert J. Hijmans [cre, aut] (), Roger Bivand [ctb] (), Michael Chirico [ctb], Emanuele Cordano [ctb] (), Krzysztof Dyba [ctb] (), Edzer Pebesma [ctb] (), Barry Rowlingson [ctb], Michael D. Sumner [ctb]", + "Repository": "CRAN" + }, + "textshaping": { + "Package": "textshaping", + "Version": "1.0.0", + "Source": "Repository", + "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library. 'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/textshaping", + "BugReports": "https://github.com/r-lib/textshaping/issues", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ + "lifecycle", + "stats", + "stringi", + "systemfonts (>= 1.1.0)", + "utils" + ], + "Suggests": [ + "covr", + "grDevices", + "grid", + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "cpp11 (>= 0.2.1)", + "systemfonts (>= 1.0.0)" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "freetype2, harfbuzz, fribidi", + "Config/build/compilation-database": "true", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (), Posit, PBC [cph, fnd]", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, + "tibble": { + "Package": "tibble", + "Version": "3.2.1", + "Source": "Repository", + "Title": "Simple Data Frames", + "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Romain\", family = \"Francois\", role = \"ctb\", email = \"romain@r-enthusiasts.com\"), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\"), person(given = \"RStudio\", role = c(\"cph\", \"fnd\")))", + "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.", + "License": "MIT + file LICENSE", + "URL": "https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble", + "BugReports": "https://github.com/tidyverse/tibble/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "fansi (>= 0.4.0)", + "lifecycle (>= 1.0.0)", + "magrittr", + "methods", + "pillar (>= 1.8.1)", + "pkgconfig", + "rlang (>= 1.0.2)", + "utils", + "vctrs (>= 0.4.2)" + ], + "Suggests": [ + "bench", + "bit64", + "blob", + "brio", + "callr", + "cli", + "covr", + "crayon (>= 1.3.4)", + "DiagrammeR", + "dplyr", + "evaluate", + "formattable", + "ggplot2", + "here", + "hms", + "htmltools", + "knitr", + "lubridate", + "mockr", + "nycflights13", + "pkgbuild", + "pkgload", + "purrr", + "rmarkdown", + "stringi", + "testthat (>= 3.0.2)", + "tidyr", + "withr" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "true", + "Config/autostyle/rmd": "false", + "Config/Needs/website": "tidyverse/tidytemplate", + "NeedsCompilation": "yes", + "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" + }, + "tidyr": { + "Package": "tidyr", + "Version": "1.3.1", + "Source": "Repository", + "Title": "Tidy Messy Data", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevin@posit.co\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Tools to help to create tidy data, where each column is a variable, each row is an observation, and each cell contains a single value. 'tidyr' contains tools for changing the shape (pivoting) and hierarchy (nesting and 'unnesting') of a dataset, turning deeply nested lists into rectangular data frames ('rectangling'), and extracting values out of string columns. It also includes tools for working with missing values (both implicit and explicit).", + "License": "MIT + file LICENSE", + "URL": "https://tidyr.tidyverse.org, https://github.com/tidyverse/tidyr", + "BugReports": "https://github.com/tidyverse/tidyr/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Imports": [ + "cli (>= 3.4.1)", + "dplyr (>= 1.0.10)", + "glue", + "lifecycle (>= 1.0.3)", + "magrittr", + "purrr (>= 1.0.1)", + "rlang (>= 1.1.1)", + "stringr (>= 1.5.0)", + "tibble (>= 2.1.1)", + "tidyselect (>= 1.2.0)", + "utils", + "vctrs (>= 0.5.2)" + ], + "Suggests": [ + "covr", + "data.table", + "knitr", + "readr", + "repurrrsive (>= 1.1.0)", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "cpp11 (>= 0.4.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.3.0", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre], Davis Vaughan [aut], Maximilian Girlich [aut], Kevin Ushey [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "RSPM" + }, + "tidyselect": { + "Package": "tidyselect", + "Version": "1.2.1", + "Source": "Repository", + "Title": "Select from a Set of Strings", + "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A backend for the selecting functions of the 'tidyverse'. It makes it easy to implement select-like functions in your own packages in a way that is consistent with other 'tidyverse' interfaces for selection.", + "License": "MIT + file LICENSE", + "URL": "https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect", + "BugReports": "https://github.com/r-lib/tidyselect/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ + "cli (>= 3.3.0)", + "glue (>= 1.3.0)", + "lifecycle (>= 1.0.3)", + "rlang (>= 1.0.4)", + "vctrs (>= 0.5.2)", + "withr" + ], + "Suggests": [ + "covr", + "crayon", + "dplyr", + "knitr", + "magrittr", + "rmarkdown", + "stringr", + "testthat (>= 3.1.1)", + "tibble (>= 2.1.3)" + ], + "VignetteBuilder": "knitr", + "ByteCompile": "true", + "Config/testthat/edition": "3", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.0.9000", + "NeedsCompilation": "yes", + "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Lionel Henry ", + "Repository": "RSPM" + }, + "tidyverse": { + "Package": "tidyverse", + "Version": "2.0.0", + "Source": "Repository", + "Title": "Easily Install and Load the 'Tidyverse'", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Description": "The 'tidyverse' is a set of packages that work in harmony because they share common data representations and 'API' design. This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step. Learn more about the 'tidyverse' at .", + "License": "MIT + file LICENSE", + "URL": "https://tidyverse.tidyverse.org, https://github.com/tidyverse/tidyverse", + "BugReports": "https://github.com/tidyverse/tidyverse/issues", + "Depends": [ + "R (>= 3.3)" + ], + "Imports": [ + "broom (>= 1.0.3)", + "conflicted (>= 1.2.0)", + "cli (>= 3.6.0)", + "dbplyr (>= 2.3.0)", + "dplyr (>= 1.1.0)", + "dtplyr (>= 1.2.2)", + "forcats (>= 1.0.0)", + "ggplot2 (>= 3.4.1)", + "googledrive (>= 2.0.0)", + "googlesheets4 (>= 1.0.1)", + "haven (>= 2.5.1)", + "hms (>= 1.1.2)", + "httr (>= 1.4.4)", + "jsonlite (>= 1.8.4)", + "lubridate (>= 1.9.2)", + "magrittr (>= 2.0.3)", + "modelr (>= 0.1.10)", + "pillar (>= 1.8.1)", + "purrr (>= 1.0.1)", + "ragg (>= 1.2.5)", + "readr (>= 2.1.4)", + "readxl (>= 1.4.2)", + "reprex (>= 2.0.2)", + "rlang (>= 1.0.6)", + "rstudioapi (>= 0.14)", + "rvest (>= 1.0.3)", + "stringr (>= 1.5.0)", + "tibble (>= 3.1.8)", + "tidyr (>= 1.3.0)", + "xml2 (>= 1.3.3)" + ], + "Suggests": [ + "covr (>= 3.6.1)", + "feather (>= 0.3.5)", + "glue (>= 1.6.2)", + "mockr (>= 0.2.0)", + "knitr (>= 1.41)", + "rmarkdown (>= 2.20)", + "testthat (>= 3.1.6)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], RStudio [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "timechange": { + "Package": "timechange", + "Version": "0.3.0", + "Source": "Repository", + "Title": "Efficient Manipulation of Date-Times", + "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))", + "Description": "Efficient routines for manipulation of date-time objects while accounting for time-zones and daylight saving times. 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This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.", + "Imports": [ + "xfun (>= 0.48)" + ], + "Suggests": [ + "testit", + "rstudioapi" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/rstudio/tinytex", + "BugReports": "https://github.com/rstudio/tinytex/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre, cph] (), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (), Devon Ryan [ctb] (), Ethan Heinzen [ctb], Fernando Cagua [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, + "tzdb": { + "Package": "tzdb", + "Version": "0.5.0", + "Source": "Repository", + "Title": "Time Zone Database Information", + "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Howard\", \"Hinnant\", role = \"cph\", comment = \"Author of the included date library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides an up-to-date copy of the Internet Assigned Numbers Authority (IANA) Time Zone Database. It is updated periodically to reflect changes made by political bodies to time zone boundaries, UTC offsets, and daylight saving time rules. Additionally, this package provides a C++ interface for working with the 'date' library. 'date' provides comprehensive support for working with dates and date-times, which this package exposes to make it easier for other R packages to utilize. 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