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‎.Rbuildignore‎

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^doc$
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^Meta$
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^vignettes/.quarto$
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^vignettes/*_files$
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^revdep$
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^cran-comments\.md$
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^codecov\.yml$
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^CRAN-SUBMISSION$
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^[\.]?air\.toml$

‎.github/workflows/pkgdown.yaml‎

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steps:
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- uses: actions/checkout@v4
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- uses: quarto-dev/quarto-actions/setup@v2
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env:
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GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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with:
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version: pre-release
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tinytex: true
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- uses: r-lib/actions/setup-pandoc@v2
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- uses: r-lib/actions/setup-r@v2

‎.github/workflows/rhub.yaml‎

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# R-hub's generic GitHub Actions workflow file. It's canonical location is at
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# https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml
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# You can update this file to a newer version using the rhub2 package:
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#
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# rhub::rhub_setup()
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#
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# It is unlikely that you need to modify this file manually.
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name: R-hub
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run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}"
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on:
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workflow_dispatch:
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inputs:
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config:
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description: 'A comma separated list of R-hub platforms to use.'
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type: string
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default: 'linux,windows,macos'
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name:
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description: 'Run name. You can leave this empty now.'
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type: string
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id:
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description: 'Unique ID. You can leave this empty now.'
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type: string
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jobs:
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setup:
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runs-on: ubuntu-latest
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outputs:
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containers: ${{ steps.rhub-setup.outputs.containers }}
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platforms: ${{ steps.rhub-setup.outputs.platforms }}
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steps:
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# NO NEED TO CHECKOUT HERE
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- uses: r-hub/actions/setup@v1
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with:
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config: ${{ github.event.inputs.config }}
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id: rhub-setup
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linux-containers:
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needs: setup
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if: ${{ needs.setup.outputs.containers != '[]' }}
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runs-on: ubuntu-latest
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name: ${{ matrix.config.label }}
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strategy:
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fail-fast: false
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matrix:
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config: ${{ fromJson(needs.setup.outputs.containers) }}
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container:
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image: ${{ matrix.config.container }}
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steps:
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- uses: r-hub/actions/checkout@v1
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- uses: r-hub/actions/platform-info@v1
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with:
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token: ${{ secrets.RHUB_TOKEN }}
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job-config: ${{ matrix.config.job-config }}
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- uses: r-hub/actions/setup-deps@v1
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with:
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token: ${{ secrets.RHUB_TOKEN }}
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job-config: ${{ matrix.config.job-config }}
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- uses: r-hub/actions/run-check@v1
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with:
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token: ${{ secrets.RHUB_TOKEN }}
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job-config: ${{ matrix.config.job-config }}
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other-platforms:
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needs: setup
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if: ${{ needs.setup.outputs.platforms != '[]' }}
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.label }}
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strategy:
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fail-fast: false
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matrix:
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config: ${{ fromJson(needs.setup.outputs.platforms) }}
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steps:
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- uses: r-hub/actions/checkout@v1
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- uses: r-hub/actions/setup-r@v1
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with:
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job-config: ${{ matrix.config.job-config }}
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token: ${{ secrets.RHUB_TOKEN }}
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- uses: r-hub/actions/platform-info@v1
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with:
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token: ${{ secrets.RHUB_TOKEN }}
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job-config: ${{ matrix.config.job-config }}
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- uses: r-hub/actions/setup-deps@v1
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with:
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job-config: ${{ matrix.config.job-config }}
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token: ${{ secrets.RHUB_TOKEN }}
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- uses: r-hub/actions/run-check@v1
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with:
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job-config: ${{ matrix.config.job-config }}
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token: ${{ secrets.RHUB_TOKEN }}

‎.gitignore‎

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.Rproj.user
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.Rhistory
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.vscode
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inst/doc
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docs
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‎.vscode/extensions.json‎

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{
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"recommendations": [
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"Posit.air-vscode"
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]
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}

‎.vscode/settings.json‎

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{
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"[r]": {
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"editor.formatOnSave": true,
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"editor.defaultFormatter": "Posit.air-vscode"
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}
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}

‎DESCRIPTION‎

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Package: quarto
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Title: R Interface to 'Quarto' Markdown Publishing System
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Version: 1.4.2
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Version: 1.4.4.9011
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Authors@R: c(
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person("JJ", "Allaire", , "[email protected]", role = "aut",
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comment = c(ORCID = "0000-0003-0174-9868")),
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person("Christophe", "Dervieux", , "[email protected]", role = c("cre", "aut"),
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comment = c(ORCID = "0000-0003-4474-2498")),
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person("Posit Software, PBC", role = c("cph", "fnd"))
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person("Posit Software, PBC", role = c("cph", "fnd")),
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person("Gordon", "Woodhull", role = "ctb")
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)
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Description: Convert R Markdown documents and 'Jupyter' notebooks to a
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variety of output formats using 'Quarto'.
@@ -16,7 +17,7 @@ URL: https://github.com/quarto-dev/quarto-r,
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BugReports: https://github.com/quarto-dev/quarto-r/issues
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Depends:
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R (>= 3.6)
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Imports:
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Imports:
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cli,
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fs,
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jsonlite,
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utils,
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yaml
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Suggests:
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bslib,
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callr,
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curl,
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dplyr,
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flextable,
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ggiraph,
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ggplot2,
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gt,
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heatmaply,
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knitr,
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palmerpenguins,
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patchwork,
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pkgload,
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plotly,
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rsconnect (>= 0.8.26),
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testthat (>= 3.1.7),
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thematic,
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tidyverse,
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withr,
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whoami,
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xfun
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Encoding: UTF-8
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Roxygen: list(markdown = TRUE)
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RoxygenNote: 7.3.2
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SystemRequirements: Quarto command line tools
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(https://github.com/quarto-dev/quarto-cli).
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SystemRequirements: Quarto command line tool
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(<https://github.com/quarto-dev/quarto-cli>).

‎NAMESPACE‎

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export(is_using_quarto)
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export(new_blog_post)
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export(quarto_add_extension)
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export(quarto_available)
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export(quarto_binary_sitrep)
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export(quarto_create_project)
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export(quarto_inspect)
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export(quarto_list_extensions)
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export(quarto_path)
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export(quarto_preview)
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export(quarto_preview_stop)
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export(quarto_publish_app)
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export(quarto_publish_doc)
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export(quarto_publish_site)
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export(quarto_remove_extension)
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export(quarto_render)
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export(quarto_serve)
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export(quarto_update_extension)
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export(quarto_use_template)
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export(quarto_version)
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export(theme_brand_flextable)
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export(theme_brand_ggplot2)
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export(theme_brand_gt)
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export(theme_brand_plotly)
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export(theme_brand_thematic)
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export(theme_colors_flextable)
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export(theme_colors_ggplot2)
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export(theme_colors_gt)
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export(theme_colors_plotly)
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export(theme_colors_thematic)
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import(rlang)
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importFrom(cli,cli_abort)
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importFrom(cli,cli_inform)

‎NEWS.md‎

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# quarto (development version)
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- Added a `new_blog_post()` function (#22).
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- Added a `new_blog_post()` function (thanks, @topeto, #22).
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- Quarto CLI will now correctly use the same R version than the one used to run functions in this package (#204).
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- Add `quarto_available()` function to check if Quarto CLI is found (thanks, @hadley, #187).
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- `quarto_render()` now correctly set `as_job` when not inside RStudio IDE and required **rstudioapi** functions are not available (#203).
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- Add several new wrapper function (thanks, @parmsam, #192):
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- `quarto_list_extensions()` to list installed extensions using `quarto list extensions`
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- `quarto_remove_extension()` to remove an installed extension using `quarto remove extensions`
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- `quarto_update_extension()` to update an installed extension using `quarto update extensions`
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- `quarto_create_project()` offers better user experience now (thanks, @jennybc, #206, #153).
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- `quarto_preview()` gains a `quiet` argument to suppress any output from R or Quarto CLI (thanks, @cwickham, #232.)
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- Add some helpers function `theme_brand_*` and `theme_colors_*` to help theme with dark and light brand using some common graph and table packages (thanks, @gordonwoodhull, [#234](https://github.com/quarto-dev/quarto-r/issues/234)).
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- Add `quarto.quiet` options to allow more verbose error message when `quarto_*` function are used inside other package.
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For example, inside **pkgdown** for building Quarto vignettes. **pkgdown** sets `quiet = TRUE` internally for its call to `quarto_render()`,
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and setting `options(quarto.quiet = TRUE)` allows to overwrite this.
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- `quarto_path()` now returns a normalized path with potential symlink resolved, for less confusion with `quarto_binary_sitrep()` (thanks, @jennybc).
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- Fix an error with interactive prompt for extension approval (thanks, @wjschne, #212).
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- `quarto_path()` now correctly return `NULL` when no quarto is found in the PATH (thanks, @jeroen, #220, #221).
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- `QUARTO_R_QUIET` environment variable can be used to set `quarto.quiet` option, which overrides any `quiet = TRUE` argument passed to `quarto_*` functions. This can be useful to debug Quarto rendering inside other packages, like **pkgdown**. Overrides will also now happens for [GHA debug logging](https://docs.github.com/en/actions/monitoring-and-troubleshooting-workflows/troubleshooting-workflows/enabling-debug-logging).
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- Correctly report Quarto CLI error when background process call to `quarto` fails (thanks, @salim-b, [#235](https://github.com/quarto-dev/quarto-r/issues/235))
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# quarto 1.4.4
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- `quarto_preview()` now looks at `quarto preview` log to browse to the correct url when inside RStudio viewer (thanks, @aronatkins, #167).
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- This package now uses the x.y.z.dev versionning scheme to indicate development, patch, minor and major versions. This follows [Tidyverse package version conventions](https://r-pkgs.org/lifecycle.html#sec-lifecycle-version-number-tidyverse).
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- Adapt tests for CRAN checks issues due to Quarto v1.5.54 regression (though it is fixed upstream).
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- Approval check in `quarto_add_extension()` and `quarto_use_template()` now works correctly (thanks, @eveyp, #172).
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- Add registration of vignette engine to use `quarto` as a vignette builder, and use `.qmd` file as vignette. See `vignette("hello", package = "quarto")`. (thanks, @dcnorris, #57).
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- New `quarto_binary_sitrep()` checks possible difference in Quarto binary used by this package, and the one used by RStudio IDE (thanks, @jthomasmock, #12).
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- New `is_using_quarto()` to check if a directory requires using Quarto (i.e. it has a `_quarto.yml` or at least one `*.qmd` file) (thanks, @hadley, #103).
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- New `quarto_create_project()` calls `quarto create project <type> <name>` (thanks, @maelle, #87).

‎R/add.R‎

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#' @importFrom rlang is_interactive
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#' @importFrom cli cli_abort
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#' @export
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quarto_add_extension <- function(extension = NULL, no_prompt = FALSE, quiet = FALSE, quarto_args = NULL) {
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quarto_add_extension <- function(
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extension = NULL,
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no_prompt = FALSE,
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quiet = FALSE,
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quarto_args = NULL
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) {
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rlang::check_required(extension)
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quarto_bin <- find_quarto()
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# This will ask for approval or stop installation
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approval <- check_extension_approval(no_prompt, "Quarto extensions", "https://quarto.org/docs/extensions/managing.html")
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approval <- check_extension_approval(
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no_prompt,
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"Quarto extensions",
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"https://quarto.org/docs/extensions/managing.html"
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)
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if (approval) {
43-
args <- c(extension, "--no-prompt", if (quiet) cli_arg_quiet(), quarto_args)
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args <- c(
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extension,
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"--no-prompt",
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if (is_quiet(quiet)) cli_arg_quiet(),
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quarto_args
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)
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quarto_add(args, quarto_bin = quarto_bin, echo = TRUE)
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}
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