Merge branch 'main' into liouvillian

Author: ytdHuang

.github/workflows/Benchmarks.yml

@@ -37,7 +37,7 @@ jobs:
       - uses: actions/checkout@v5
       - uses: julia-actions/setup-julia@v2
         with:
-          version: '1'
+          version: '1.11'
           arch: x64
       - uses: julia-actions/cache@v2
       - name: Run benchmark

.github/workflows/CI.yml

@@ -56,23 +56,28 @@ jobs:
 
         include:
           # for core tests (intermediate versions)
-          # - version: '1.x'
-          #   node:
-          #     os: 'ubuntu-latest'
-          #     arch: 'x64'
-          #   group: 'Core'
+          - version: '1.11'
+            node:
+              os: 'ubuntu-latest'
+              arch: 'x64'
+            group: 'Core'
 
           # for extension tests
           - version: '1'
             node:
               os: 'ubuntu-latest'
               arch: 'x64'
             group: 'Makie_Ext'
-          - version: '1'
+          - version: '1.11'
             node:
               os: 'ubuntu-latest'
               arch: 'x64'
             group: 'AutoDiff_Ext'
+          - version: '1'
+            node:
+              os: 'ubuntu-latest'
+              arch: 'x64'
+            group: 'Arbitrary-Precision'
 
     steps:
       - uses: actions/checkout@v5

.github/workflows/CleanPreviewDoc.yml

@@ -3,10 +3,12 @@ name: Cleanup Preview Documentation
 on:
   pull_request:
     types: [closed]
+  schedule:
+    - cron: "0 0 * * 0"  # Run weekly on Sunday at midnight
+  workflow_dispatch:
 
 permissions:
     contents: write
-    deployments: write
 
 jobs:
   cleanup-preview-doc:
@@ -16,16 +18,47 @@ jobs:
         uses: actions/checkout@v5
         with:
           ref: gh-pages
-      - name: Delete preview and history + push changes
+      - name: Delete preview(s) and reset history
         run: |
-            if [ -d "previews/PR$PRNUM" ]; then
+            # If triggered by PR close, delete that specific preview
+            if [ "${{ github.event_name }}" = "pull_request" ]; then
+              PRNUM=${{ github.event.number }}
+              if [ -d "previews/PR$PRNUM" ]; then
+                echo "Deleting preview for PR #$PRNUM"
+                git rm -rf "previews/PR$PRNUM"
+              fi
+            else
+              # Scheduled/manual run: check all previews against open PRs
+              echo "Checking all preview folders for stale PRs..."
+              
+              # Get list of all PR preview folders
+              if [ -d "previews" ]; then
+                for dir in previews/PR*; do
+                  [ -d "$dir" ] || continue
+                  PRNUM=$(echo "$dir" | grep -oP 'PR\K\d+')
+                  
+                  # Check if PR is still open via GitHub API
+                  STATUS=$(curl -s -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" \
+                    "https://api.github.com/repos/${{ github.repository }}/pulls/$PRNUM" \
+                    | jq -r '.state // "closed"')
+                  
+                  if [ "$STATUS" != "open" ]; then
+                    echo "Deleting stale preview for closed PR #$PRNUM"
+                    git rm -rf "$dir"
+                  fi
+                done
+              fi
+            fi
+            
+            # Only commit and push if there are changes
+            if ! git diff --cached --quiet; then
               git config user.name "Documenter.jl"
               git config user.email "[email protected]"
-              git rm -rf "previews/PR$PRNUM"
-              git commit -m "delete preview"
+              git commit -m "delete preview(s)"
               git branch gh-pages-new $(echo "delete history" | git commit-tree HEAD^{tree})
               git push --force origin gh-pages-new:gh-pages
+            else
+              echo "No stale previews found"
             fi
         env:
             GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-            PRNUM: ${{ github.event.number }}

.github/workflows/Code-Quality.yml

@@ -40,6 +40,7 @@ jobs:
       matrix:
         version:
           - 'lts'
+          - '1'
         os:
           - 'ubuntu-latest'
         arch:

.github/workflows/SpellCheck.yml

@@ -10,4 +10,4 @@ jobs:
       - name: Checkout Actions Repository
         uses: actions/checkout@v5
       - name: Check spelling
-        uses: crate-ci/typos@v1.35.5
+        uses: crate-ci/typos@v1.38.1

.github/workflows/documentation.yml

@@ -46,7 +46,7 @@ jobs:
       - uses: actions/checkout@v5
       - uses: julia-actions/setup-julia@v2
         with:
-          version: '1'
+          version: '1.11'
       - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-docdeploy@v1

CHANGELOG.md

@@ -9,6 +9,33 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - Generalize the definition of `liouvillian`. It no longer expects the Hamiltonian to be Hermitian. ([#541])
 
+## [v0.38.1]
+Release date: 2025-10-27
+
+- Add `ProgressMeterKWARGS` in `QuantumToolbox.settings` for customizing progress bar. ([#579])
+
+## [v0.38.0]
+Release date: 2025-10-27
+
+- Introduce new methods of `sesolve_map` and `mesolve_map` for advanced usage. Users can now customize their own `iter`ator structure, `prob_func` and `output_func`. ([#565])
+- Use `ProgressMeter.jl` for progress bar rather than our in-house implementation. ([#569], [#575])
+- Simplify type structure for time evolution solutions. ([#572])
+- Add support to arbitrary precision computation. Tested for `sesolve`, `mesolve` and `eigensolve`. ([#576])
+
+## [v0.37.0]
+Release date: 2025-10-12
+
+- Fix `cite()` bibtex output. ([#552])
+- Implement `sesolve_map` and `mesolve_map` for solving multiple initial states and parameter sets in parallel. ([#554])
+- Add `qeye_like` and `qzero_like`, which are synonyms of `one` and `zero`. ([#555])
+- Add steadystate and DSF benchmarks. The `SteadyStateODESOlver` tolerances are lowered to `terminate_reltol=1e-4` and `terminate_abstol=1e-6` to improve speed at the cost of accuracy. ([#557])
+
+## [v0.36.0]
+Release date: 2025-09-29
+
+- Add `QuantumToolbox.cite()` for bibtex generator of `QuantumToolbox.jl`. ([#544])
+- Add `sortby` and `rev` keyword arguments to eigensolvers. ([#546])
+
 ## [v0.35.0]
 Release date: 2025-09-03
 
@@ -225,6 +252,10 @@ Release date: 2024-11-13
 [v0.34.0]: https://github.com/qutip/QuantumToolbox.jl/releases/tag/v0.34.0
 [v0.34.1]: https://github.com/qutip/QuantumToolbox.jl/releases/tag/v0.34.1
 [v0.35.0]: https://github.com/qutip/QuantumToolbox.jl/releases/tag/v0.35.0
+[v0.36.0]: https://github.com/qutip/QuantumToolbox.jl/releases/tag/v0.36.0
+[v0.37.0]: https://github.com/qutip/QuantumToolbox.jl/releases/tag/v0.37.0
+[v0.38.0]: https://github.com/qutip/QuantumToolbox.jl/releases/tag/v0.38.0
+[v0.38.1]: https://github.com/qutip/QuantumToolbox.jl/releases/tag/v0.38.1
 [#86]: https://github.com/qutip/QuantumToolbox.jl/issues/86
 [#139]: https://github.com/qutip/QuantumToolbox.jl/issues/139
 [#271]: https://github.com/qutip/QuantumToolbox.jl/issues/271
@@ -317,3 +348,15 @@ Release date: 2024-11-13
 [#537]: https://github.com/qutip/QuantumToolbox.jl/issues/537
 [#539]: https://github.com/qutip/QuantumToolbox.jl/issues/539
 [#541]: https://github.com/qutip/QuantumToolbox.jl/issues/541
+[#544]: https://github.com/qutip/QuantumToolbox.jl/issues/544
+[#546]: https://github.com/qutip/QuantumToolbox.jl/issues/546
+[#552]: https://github.com/qutip/QuantumToolbox.jl/issues/552
+[#554]: https://github.com/qutip/QuantumToolbox.jl/issues/554
+[#555]: https://github.com/qutip/QuantumToolbox.jl/issues/555
+[#557]: https://github.com/qutip/QuantumToolbox.jl/issues/557
+[#565]: https://github.com/qutip/QuantumToolbox.jl/issues/565
+[#569]: https://github.com/qutip/QuantumToolbox.jl/issues/569
+[#572]: https://github.com/qutip/QuantumToolbox.jl/issues/572
+[#575]: https://github.com/qutip/QuantumToolbox.jl/issues/575
+[#576]: https://github.com/qutip/QuantumToolbox.jl/issues/576
+[#579]: https://github.com/qutip/QuantumToolbox.jl/issues/579

CITATION.bib

@@ -1,11 +1,13 @@
-@article{QuantumToolbox-jl2025,
-    title={{QuantumToolbox.jl}: An efficient {Julia} framework for simulating open quantum systems},
-    author={Mercurio, Alberto and Huang, Yi-Te and Cai, Li-Xun and Chen, Yueh-Nan and Savona, Vincenzo and Nori, Franco},
-    journal={arXiv preprint arXiv:2504.21440},
-    year={2025},
-    publisher = {arXiv},
-    eprint={2504.21440},
-    archivePrefix={arXiv},
-    primaryClass={quant-ph},
-    doi = {10.48550/arXiv.2504.21440}
+@article{QuantumToolbox.jl2025,
+  title = {Quantum{T}oolbox.jl: {A}n efficient {J}ulia framework for simulating open quantum systems},
+  author = {Mercurio, Alberto and Huang, Yi-Te and Cai, Li-Xun and Chen, Yueh-Nan and Savona, Vincenzo and Nori, Franco},
+  journal = {{Quantum}},
+  issn = {2521-327X},
+  publisher = {{Verein zur F{\"{o}}rderung des Open Access Publizierens in den Quantenwissenschaften}},
+  volume = {9},
+  pages = {1866},
+  month = sep,
+  year = {2025},
+  doi = {10.22331/q-2025-09-29-1866},
+  url = {https://doi.org/10.22331/q-2025-09-29-1866}
 }

Makefile

@@ -12,10 +12,10 @@ changelog:
 	${JULIA} -e 'using Changelog; Changelog.generate(Changelog.CommonMark(), "CHANGELOG.md"; repo = "qutip/QuantumToolbox.jl")'
 
 test:
-	${JULIA} --project -e 'using Pkg; Pkg.resolve(); Pkg.test()'
+	${JULIA} --project -e 'using Pkg; Pkg.update(); Pkg.test()'
 
 docs:
-	${JULIA} --project=docs -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+	${JULIA} --project=docs -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.update()'
 	${JULIA} --project=docs docs/make.jl
 
 vitepress:

Project.toml

@@ -1,7 +1,7 @@
 name = "QuantumToolbox"
 uuid = "6c2fb7c5-b903-41d2-bc5e-5a7c320b9fab"
+version = "0.38.1"
 authors = ["Alberto Mercurio", "Yi-Te Huang"]
-version = "0.35.0"
 
 [deps]
 ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
@@ -18,6 +18,7 @@ LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
 OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8"
 OrdinaryDiffEqTsit5 = "b1df2697-797e-41e3-8120-5422d3b24e4a"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 SciMLOperators = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
@@ -42,7 +43,7 @@ QuantumToolboxMakieExt = "Makie"
 
 [compat]
 ArrayInterface = "6, 7"
-CUDA = "5"
+CUDA = "5.0 - 5.8"
 ChainRulesCore = "1"
 DiffEqBase = "6"
 DiffEqCallbacks = "4.2.1 - 4"
@@ -52,14 +53,15 @@ FFTW = "1.5"
 GPUArrays = "10, 11"
 Graphs = "1.7"
 IncompleteLU = "0.2"
-KernelAbstractions = "0.9.2"
+KernelAbstractions = "0.9"
 LaTeXStrings = "1.2"
 LinearAlgebra = "1"
 LinearSolve = "2, 3"
 Makie = "0.24"
 OrdinaryDiffEqCore = "1"
 OrdinaryDiffEqTsit5 = "1"
 Pkg = "1"
+ProgressMeter = "1.11.0"
 Random = "1"
 SciMLBase = "2.105"
 SciMLOperators = "1.4"