options(install.lock = FALSE) in .Rprofile interrupts installation #768
Description
When options(install.lock = FALSE) is set in .Rprofile, pak::pak will stop when a package is successfully installed:
Error:
! error in pak subprocess
Caused by error in `filelock::unlock(lockfile)`:
! `unlock()` needs a lock object, not a file name
full error message
> install.packages("pak") # install pak
Installing package into ‘...’
...
*** copying figures
** building package indices
** testing if installed package can be loaded
* DONE (pak)
The downloaded source packages are in
‘/tmp/Rtmp2yu1M1/downloaded_packages’
> pak::pak("ggplot2")
✔ Loading metadata database ... done
→ Will install 21 packages.
→ All 21 packages (12.96 MB) are cached.
+ cli 3.6.5 [bld][cmp]
+ fansi 1.0.6 [bld][cmp]
+ farver 2.1.2 [bld][cmp]
+ ggplot2 3.5.2 [bld]
+ glue 1.8.0 [bld][cmp]
+ gtable 0.3.6 [bld]
+ isoband 0.2.7 [bld][cmp]
+ labeling 0.4.3 [bld]
+ lifecycle 1.0.4 [bld]
+ magrittr 2.0.3 [bld][cmp]
+ pillar 1.10.2 [bld]
+ pkgconfig 2.0.3 [bld]
+ R6 2.6.1 [bld]
+ RColorBrewer 1.1-3 [bld]
+ rlang 1.1.6 [bld][cmp]
+ scales 1.4.0 [bld]
+ tibble 3.2.1 [bld][cmp]
+ utf8 1.2.4 [bld][cmp]
+ vctrs 0.6.5 [bld][cmp]
+ viridisLite 0.4.2 [bld]
+ withr 3.0.2 [bld]
ℹ No downloads are needed, 21 pkgs (12.96 MB) are cached
ℹ Building cli 3.6.5
ℹ Building fansi 1.0.6
ℹ Building farver 2.1.2
ℹ Building glue 1.8.0
ℹ Building isoband 0.2.7
ℹ Building labeling 0.4.3
ℹ Building magrittr 2.0.3
ℹ Building pkgconfig 2.0.3
ℹ Building R6 2.6.1
ℹ Building RColorBrewer 1.1-3
ℹ Building rlang 1.1.6
ℹ Building utf8 1.2.4
✔ Built isoband 0.2.7 (2.3s)
✔ Built magrittr 2.0.3 (2s)
✔ Built pkgconfig 2.0.3 (1.9s)
✔ Built RColorBrewer 1.1-3 (1.6s)
ℹ Building viridisLite 0.4.2
ℹ Building withr 3.0.2
✔ Built labeling 0.4.3 (4.8s)
Error:
! error in pak subprocess
Caused by error in `filelock::unlock(lockfile)`:
! `unlock()` needs a lock object, not a file name
Type .Last.error to see the more details.
.Last.error
> .Last.error
<callr_error/rlib_error_3_0/rlib_error/error>
Error:
! error in pak subprocess
Caused by error in `filelock::unlock(lockfile)`:
! `unlock()` needs a lock object, not a file name
---
Backtrace:
1. pak::pak("ggplot2")
2. pak::pkg_install(pkg, ...)
3. pak:::remote(function(...) get("pkg_install_do_plan", asNamespace("pak"))(...), …
4. err$throw(res$error)
---
Subprocess backtrace:
1. base::withCallingHandlers(cli_message = function(msg) { …
2. get("pkg_install_do_plan", asNamespace("pak"))(...)
3. proposal$install()
4. pkgdepends::install_package_plan(plan, lib = private$library, num_workers = nw, …
5. base::withCallingHandlers({ …
6. pkgdepends:::handle_events(state, events)
7. pkgdepends:::handle_event(state, i)
8. proc$get_result()
9. processx:::process_get_result(self, private)
10. private$post_process()
11. pkgdepends:::install_extracted_binary(filename, lib_cache, pkg_cache, lib, …
12. filelock::unlock(lockfile)
13. base::stop("`unlock()` needs a lock object, not a file name")
14. | base::.handleSimpleError(function (e) …
15. global h(simpleError(msg, call))
run pak::pak again
> pak::pak("ggplot2")
→ Will install 20 packages.
→ All 20 packages (11.37 MB) are cached.
+ cli 3.6.5 [bld][cmp]
+ fansi 1.0.6 [bld][cmp]
+ farver 2.1.2 [bld][cmp]
+ ggplot2 3.5.2 [bld]
+ glue 1.8.0 [bld][cmp]
+ gtable 0.3.6 [bld]
+ labeling 0.4.3 [bld]
+ lifecycle 1.0.4 [bld]
+ magrittr 2.0.3 [bld][cmp]
+ pillar 1.10.2 [bld]
+ pkgconfig 2.0.3 [bld]
+ R6 2.6.1 [bld]
+ RColorBrewer 1.1-3 [bld]
+ rlang 1.1.6 [bld][cmp]
+ scales 1.4.0 [bld]
+ tibble 3.2.1 [bld][cmp]
+ utf8 1.2.4 [bld][cmp]
+ vctrs 0.6.5 [bld][cmp]
+ viridisLite 0.4.2 [bld]
+ withr 3.0.2 [bld]
ℹ No downloads are needed, 20 pkgs (11.37 MB) are cached
ℹ Building cli 3.6.5
ℹ Building fansi 1.0.6
ℹ Building farver 2.1.2
ℹ Building glue 1.8.0
ℹ Building labeling 0.4.3
ℹ Building magrittr 2.0.3
ℹ Building pkgconfig 2.0.3
ℹ Building R6 2.6.1
ℹ Building RColorBrewer 1.1-3
ℹ Building rlang 1.1.6
ℹ Building utf8 1.2.4
ℹ Building viridisLite 0.4.2
✔ Built magrittr 2.0.3 (3.5s)
✔ Built pkgconfig 2.0.3 (3.3s)
✔ Built RColorBrewer 1.1-3 (2.9s)
ℹ Building withr 3.0.2
✔ Built glue 1.8.0 (5.5s)
✔ Built labeling 0.4.3 (5.2s)
✔ Built R6 2.6.1 (5.5s)
Error:
! error in pak subprocess
Caused by error in `filelock::unlock(lockfile)`:
! `unlock()` needs a lock object, not a file name
Type .Last.error to see the more details.
isoband is not seen since it has been successfully installed (in the previous pak::pak command)
Notice that options(install.lock = FALSE) must be set in the R_PROFILE file when the R session is launched.
Runing options(install.lock = FALSE) in a reactive session after R has started won't cause this behavior.
pak version: 0.8.0.2
OS Environment: Debian 11 WSL 1, also tested in Ubuntu 22.04 WSL2
sessionInfo
> sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 11 (bullseye)
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.13.so
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.2 tools_4.2.2 pak_0.8.0.2
This problem has been reported in PR #754, but it doesn't seem to get any attention there, so I made it as an issue again. sorry for the dup.