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Update revdep checks
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‎revdep/README.md‎

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# Revdeps
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## Failed to check (237)
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|package |version |error |warning |note |
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|:---------------------------|:-------|:-----|:-------|:----|
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|aggregateBioVar |? | | | |
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|airpart |? | | | |
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|alevinQC |? | | | |
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|AlpsNMR |? | | | |
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|AnVIL |? | | | |
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|APL |? | | | |
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|ArrayExpress |? | | | |
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|autonomics |? | | | |
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|bandle |? | | | |
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|barcodetrackR |? | | | |
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|bayesdfa |1.3.1 |1 | | |
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|benchmarkfdrData2019 |? | | | |
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|BindingSiteFinder |? | | | |
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|BiocBook |? | | | |
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|BiocPkgTools |? | | | |
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|BiocSet |? | | | |
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|biocthis |? | | | |
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|BioNERO |? | | | |
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|biovizBase |? | | | |
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|biscuiteer |? | | | |
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|brendaDb |? | | | |
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|brolgar |? | | | |
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|cageminer |? | | | |
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|CBEA |? | | | |
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|CBNplot |? | | | |
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|cbpManager |? | | | |
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|celaref |? | | | |
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|CellaRepertorium |? | | | |
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|CellBench |? | | | |
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|censcyt |? | | | |
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|Cepo |? | | | |
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|ceRNAnetsim |? | | | |
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|cfdnakit |? | | | |
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|cfDNAPro |? | | | |
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|circRNAprofiler |? | | | |
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|CircSeqAlignTk |? | | | |
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|CiteFuse |? | | | |
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|ClassifyR |? | | | |
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|clusterProfiler |? | | | |
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|clustifyr |? | | | |
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|cogeqc |? | | | |
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|comapr |? | | | |
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|COMPASS |? | | | |
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|ComPrAn |? | | | |
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|concordexR |? | | | |
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|CoreGx |? | | | |
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|cosmosR |? | | | |
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|COTAN |? | | | |
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|crisprVerse |? | | | |
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|cTRAP |? | | | |
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|CuratedAtlasQueryR |? | | | |
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|curatedMetagenomicData |? | | | |
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|curatedTBData |? | | | |
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|CyTOFpower |? | | | |
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|CytoGLMM |? | | | |
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|cytoKernel |? | | | |
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|CytoPipeline |? | | | |
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|dce |? | | | |
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|dearseq |? | | | |
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|decoupleR |? | | | |
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|DEGreport |? | | | |
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|DIAlignR |? | | | |
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|dStruct |? | | | |
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|easier |? | | | |
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|easyalluvial |? | | | |
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|easyreporting |? | | | |
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|enrichplot |? | | | |
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|EpiMix |? | | | |
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|escape |? | | | |
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|escheR |? | | | |
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|evaluator |? | | | |
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|extraChIPs |? | | | |
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|factR |? | | | |
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|fenr |? | | | |
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|FindIT2 |? | | | |
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|flowGate |? | | | |
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|FlowSOM |? | | | |
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|flowTime |? | | | |
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|gemma.R |? | | | |
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|genekitr |? | | | |
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|GeneTonic |? | | | |
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|GenomicDataCommons |? | | | |
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|GeomxTools |? | | | |
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|gg4way |? | | | |
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|ggbio |? | | | |
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|ggcyto |? | | | |
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|ggmanh |? | | | |
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|ggsc |? | | | |
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|ggtree |? | | | |
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|ggtreeExtra |? | | | |
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|glmGamPoi |? | | | |
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|GloScope |? | | | |
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|GOSemSim |? | | | |
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|grandR |? | | | |
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|GRaNIE |? | | | |
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|granulator |? | | | |
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|graphite |? | | | |
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|GSEAmining |? | | | |
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|GUIDEseq |? | | | |
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|HCAExplorer |? | | | |
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|hermes |? | | | |
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|HiCDCPlus |? | | | |
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|HIPPO |? | | | |
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|hoodscanR |? | | | |
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|hypeR |? | | | |
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|iCNV |? | | | |
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|ideal |? | | | |
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|idpr |? | | | |
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|immcp |? | | | |
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|immunotation |? | | | |
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|InterCellar |? | | | |
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|IntOMICS |? | | | |
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|ISAnalytics |? | | | |
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|isomiRs |? | | | |
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|isoreader |? | | | |
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|jsontools |? | | | |
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|katdetectr |? | | | |
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|ldblock |? | | | |
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|lipidr |? | | | |
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|loon.ggplot |? | | | |
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|mariner |? | | | |
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|marr |? | | | |
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|MatrixQCvis |? | | | |
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|memes |? | | | |
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|metabCombiner |? | | | |
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|MetaScope |? | | | |
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|MethReg |? | | | |
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|MetNet |? | | | |
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|mia |? | | | |
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|miaViz |? | | | |
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|microbiomeExplorer |? | | | |
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|microbiomeMarker |? | | | |
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|MicrobiotaProcess |? | | | |
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|microSTASIS |? | | | |
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|midasHLA |? | | | |
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|mistyR |? | | | |
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|MoleculeExperiment |? | | | |
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|MOMA |? | | | |
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|MOSim |? | | | |
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|MQmetrics |? | | | |
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|MSA2dist |? | | | |
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|MSnID |? | | | |
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|MSPrep |? | | | |
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|multiGSEA |? | | | |
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|MultiRNAflow |? | | | |
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|musicatk |? | | | |
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|NanoMethViz |? | | | |
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|NanoporeRNASeq |? | | | |
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|nanotatoR |? | | | |
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|NanoTube |? | | | |
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|nearBynding |? | | | |
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|ngsReports |? | | | |
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|nipalsMCIA |? | | | |
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|NPARC |? | | | |
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|nullranges |? | | | |
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|OlinkAnalyze |? | | | |
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|OmnipathR |? | | | |
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|optimalFlow |? | | | |
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|Organism.dplyr |? | | | |
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|orthos |? | | | |
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|PanomiR |? | | | |
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|PanViz |? | | | |
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|pareg |? | | | |
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|PAST |? | | | |
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|PDATK |? | | | |
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|PhosR |? | | | |
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|plotgardener |? | | | |
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|plotGrouper |? | | | |
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|plyinteractions |? | | | |
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|plyranges |? | | | |
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|pmdplyr |? | | | |
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|ppcseq |? | | | |
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|proActiv |? | | | |
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|profileplyr |? | | | |
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|ProteoDisco |? | | | |
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|protGear |? | | | |
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|ptairMS |? | | | |
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|qckitfastq |? | | | |
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|qmtools |? | | | |
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|qPLEXanalyzer |? | | | |
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|QTLExperiment |? | | | |
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|quantiseqr |? | | | |
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|RAIDS |? | | | |
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|Rcpi |? | | | |
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|ReactomeGraph4R |? | | | |
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|restfulSE |? | | | |
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|RiboCrypt |? | | | |
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|ribor |? | | | |
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|rifi |? | | | |
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|rifiComparative |? | | | |
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|RNAseqCovarImpute |? | | | |
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|RVA |? | | | |
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|scater |? | | | |
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|sccomp |? | | | |
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|scFeatureFilter |? | | | |
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|scider |? | | | |
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|scifer |? | | | |
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|scPipe |? | | | |
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|SCpubr |? | | | |
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|ScreenR |? | | | |
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|scRepertoire |? | | | |
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|seqCAT |? | | | |
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|shinyepico |? | | | |
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|single |? | | | |
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|singleCellTK |? | | | |
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|snapcount |? | | | |
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|SpatialCPie |? | | | |
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|SpatialFeatureExperiment |? | | | |
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|SPIAT |? | | | |
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|spicyR |? | | | |
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|splatter |? | | | |
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|SpotClean |? | | | |
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|sSNAPPY |? | | | |
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|standR |? | | | |
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|StructuralVariantAnnotation |? | | | |
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|SummarizedBenchmark |? | | | |
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|supersigs |? | | | |
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|svaNUMT |? | | | |
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|svaRetro |? | | | |
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|syntenet |? | | | |
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|systemPipeShiny |? | | | |
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|tadar |? | | | |
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|TBSignatureProfiler |? | | | |
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|tidybulk |? | | | |
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|tidySingleCellExperiment |? | | | |
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|tidySummarizedExperiment |? | | | |
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|treeio |? | | | |
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|TreeSummarizedExperiment |? | | | |
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|triptych |0.1.2 |1 | | |
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|tuberculosis |? | | | |
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|UMI4Cats |? | | | |
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|universalmotif |? | | | |
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|variancePartition |? | | | |
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|Voyager |? | | | |
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|weitrix |? | | | |
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|wpm |? | | | |
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|wppi |? | | | |
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## New problems (1)
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|package |version |error |warning |note |
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|:---------|:-------|:------|:-------|:----|
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|[eiCompare](problems.md#eicompare)|3.0.4 |__+2__ | | |
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## Failed to check (4)
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|package |version |error |warning |note |
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|:----------|:-------|:-----|:-------|:----|
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|arealDB |0.9.4 |1 | | |
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|bayesdfa |1.3.4 |1 | | |
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|fio |0.1.5 |1 | | |
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|ontologics |0.7.4 |1 | | |
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‎revdep/cran.md‎

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## revdepcheck results
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We checked 2412 reverse dependencies (2184 from CRAN + 228 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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We checked 2864 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 1 new problems
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* We failed to check 9 packages
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* We saw 0 new problems
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* We failed to check 4 packages
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Issues with CRAN packages are summarised below.
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### New problems
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(This reports the first line of each new failure)
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* eiCompare
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checking tests ... ERROR
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checking re-building of vignette outputs ... ERROR
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### Failed to check
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* bayesdfa (NA)
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* genekitr (NA)
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* grandR (NA)
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* immcp (NA)
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* loon.ggplot (NA)
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* OlinkAnalyze (NA)
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* RVA (NA)
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* SCpubr (NA)
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* triptych (NA)
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* arealDB (NA)
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* bayesdfa (NA)
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* fio (NA)
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* ontologics (NA)

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