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‎revdep/README.md‎

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|field |value |
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|:--------|:----------------------------|
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|version |R version 3.5.1 (2018-07-02) |
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|os |macOS 10.14 |
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|version |R version 3.6.0 (2019-04-26) |
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|os |macOS Mojave 10.14 |
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|system |x86_64, darwin15.6.0 |
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|ui |X11 |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |Europe/Brussels |
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|date |2018-12-29 |
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|date |2019-06-20 |
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# Dependencies
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|package |old |new |Δ |
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|:-----------------|:--------|:----------|:--|
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|vdiffr |0.2.3 |0.2.3.9001 |* |
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|assertthat |0.2.0 |0.2.0 | |
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|backports |1.1.3 |1.1.3 | |
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|BH |1.66.0-1 |1.66.0-1 | |
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|callr |3.1.1 |3.1.1 | |
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|cli |1.0.1 |1.0.1 | |
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|clipr |0.4.1 |0.4.1 | |
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|clisymbols |1.2.0 |1.2.0 | |
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|crayon |1.3.4 |1.3.4 | |
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|curl |3.2 |3.2 | |
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|desc |1.2.0 |1.2.0 | |
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|devtools |2.0.1 |2.0.1 | |
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|diffobj |NA |0.1.11 |* |
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|digest |0.6.18 |0.6.18 | |
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|fansi |0.4.0 |0.4.0 | |
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|fontBitstreamVera |0.1.1 |0.1.1 | |
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|fontLiberation |0.1.0 |0.1.0 | |
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|fontquiver |0.2.1 |0.2.1 | |
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|freetypeharfbuzz |NA |0.2.5 |* |
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|fs |1.2.6 |1.2.6 | |
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|gdtools |0.1.7 |0.1.7 | |
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|gh |1.0.1 |1.0.1 | |
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|git2r |0.23.0 |0.23.0 | |
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|glue |1.3.0 |1.3.0 | |
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|htmltools |0.3.6 |0.3.6 | |
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|htmlwidgets |1.3 |1.3 | |
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|httpuv |1.4.5.1 |1.4.5.1 | |
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|httr |1.4.0 |1.4.0 | |
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|ini |0.3.1 |0.3.1 | |
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|jsonlite |1.6 |1.6 | |
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|later |0.7.5 |0.7.5 | |
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|magrittr |1.5 |1.5 | |
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|memoise |1.1.0 |1.1.0 | |
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|mime |0.6 |0.6 | |
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|openssl |1.1 |1.1 | |
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|pillar |1.3.1 |1.3.1 | |
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|pkgbuild |1.0.2 |1.0.2 | |
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|pkgload |1.0.2 |1.0.2 | |
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|praise |1.0.0 |1.0.0 | |
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|prettyunits |1.0.2 |1.0.2 | |
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|processx |3.2.1 |3.2.1 | |
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|promises |1.0.1 |1.0.1 | |
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|ps |1.3.0 |1.3.0 | |
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|purrr |0.2.5 |0.2.5 | |
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|R6 |2.3.0 |2.3.0 | |
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|rcmdcheck |1.3.2 |1.3.2 | |
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|Rcpp |1.0.0 |1.0.0 | |
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|remotes |2.0.2 |2.0.2 | |
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|rlang |0.3.0.1 |0.3.0.1 | |
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|rprojroot |1.3-2 |1.3-2 | |
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|rstudioapi |0.8 |0.8 | |
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|sessioninfo |1.1.1 |1.1.1 | |
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|shiny |1.2.0 |1.2.0 | |
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|sourcetools |0.1.7 |0.1.7 | |
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|svglite |1.2.1 |NA |* |
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|testthat |2.0.1 |2.0.1 | |
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|tibble |1.4.2 |1.4.2 | |
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|usethis |1.4.0 |1.4.0 | |
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|utf8 |1.1.4 |1.1.4 | |
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|whisker |0.3-2 |0.3-2 | |
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|withr |2.1.2 |2.1.2 | |
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|xml2 |1.2.0 |1.2.0 | |
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|xopen |1.0.0 |1.0.0 | |
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|xtable |1.8-3 |1.8-3 | |
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|yaml |2.2.0 |2.2.0 | |
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|package |old |new |Δ |
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|:-----------------|:--------|:--------|:--|
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|vdiffr |0.3.0 |0.3.1 |* |
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|askpass |1.1 |1.1 | |
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|assertthat |0.2.1 |0.2.1 | |
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|backports |1.1.4 |1.1.4 | |
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|BH |1.69.0-1 |1.69.0-1 | |
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|callr |3.2.0 |3.2.0 | |
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|cli |1.1.0 |1.1.0 | |
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|clipr |0.6.0 |0.6.0 | |
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|clisymbols |1.2.0 |1.2.0 | |
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|crayon |1.3.4 |1.3.4 | |
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|curl |3.3 |3.3 | |
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|desc |1.2.0 |1.2.0 | |
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|devtools |2.0.2 |2.0.2 | |
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|diffobj |0.2.3 |0.2.3 | |
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|digest |0.6.19 |0.6.19 | |
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|fontBitstreamVera |0.1.1 |0.1.1 | |
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|fontLiberation |0.1.0 |0.1.0 | |
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|fontquiver |0.2.1 |0.2.1 | |
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|freetypeharfbuzz |0.2.5 |0.2.5 | |
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|fs |1.3.1 |1.3.1 | |
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|gdtools |0.1.9 |0.1.9 | |
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|gh |1.0.1 |1.0.1 | |
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|git2r |0.25.2 |0.25.2 | |
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|glue |1.3.1 |1.3.1 | |
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|htmltools |0.3.6 |0.3.6 | |
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|htmlwidgets |1.3 |1.3 | |
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|httpuv |1.5.1 |1.5.1 | |
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|httr |1.4.0 |1.4.0 | |
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|ini |0.3.1 |0.3.1 | |
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|jsonlite |1.6 |1.6 | |
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|later |0.8.0 |0.8.0 | |
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|magrittr |1.5 |1.5 | |
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|memoise |1.1.0 |1.1.0 | |
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|mime |0.7 |0.7 | |
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|openssl |1.4 |1.4 | |
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|pkgbuild |1.0.3 |1.0.3 | |
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|pkgload |1.0.2 |1.0.2 | |
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|praise |1.0.0 |1.0.0 | |
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|prettyunits |1.0.2 |1.0.2 | |
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|processx |3.3.1 |3.3.1 | |
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|promises |1.0.1 |1.0.1 | |
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|ps |1.3.0 |1.3.0 | |
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|purrr |0.3.2 |0.3.2 | |
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|R6 |2.4.0 |2.4.0 | |
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|rcmdcheck |1.3.3 |1.3.3 | |
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|Rcpp |1.0.1 |1.0.1 | |
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|remotes |2.0.4 |2.0.4 | |
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|rlang |0.3.4 |0.3.4 | |
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|rprojroot |1.3-2 |1.3-2 | |
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|rstudioapi |0.10 |0.10 | |
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|sessioninfo |1.1.1 |1.1.1 | |
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|shiny |1.3.2 |1.3.2 | |
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|sourcetools |0.1.7 |0.1.7 | |
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|sys |3.2 |3.2 | |
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|testthat |2.1.1 |2.1.1 | |
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|usethis |1.5.0 |1.5.0 | |
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|whisker |0.3-2 |0.3-2 | |
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|withr |2.1.2 |2.1.2 | |
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|xml2 |1.2.0 |1.2.0 | |
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|xopen |1.0.0 |1.0.0 | |
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|xtable |1.8-4 |1.8-4 | |
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|yaml |2.2.0 |2.2.0 | |
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# Revdeps
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## Couldn't check (5)
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## Failed to check (1)
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|package |version |error |warning |note |
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|:------------------------------------------------|:-------|:------|:-------|:----|
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|[cicero](problems.md#cicero) |1.0.14 |1 | |1 |
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|[fingertipscharts](problems.md#fingertipscharts) |0.0.3 |1 | |1 |
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|[ggcyto](problems.md#ggcyto) |1.10.0 |__+1__ | |3 |
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|[ggformula](problems.md#ggformula) |0.9.0 |__+1__ | |3 |
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|[ggstatsplot](problems.md#ggstatsplot) |0.0.7 |2 | |1 |
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## All (42)
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|package |version |error |warning |note |
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|:------------------------------------------------|:-------|:------|:-------|:----|
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|atlantistools |0.4.3 | | | |
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|[bayesplot](problems.md#bayesplot) |1.6.0 | | |1 |
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|[blorr](problems.md#blorr) |0.2.0 | | |1 |
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|[cicero](problems.md#cicero) |1.0.14 |1 | |1 |
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|contextual |0.9.1 | | | |
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|cowplot |0.9.3 | | | |
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|customLayout |0.3.0 | | | |
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|[dabestr](problems.md#dabestr) |0.1.0 | |1 |2 |
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|descriptr |0.4.1 | | | |
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|earlyR |0.0.1 | | | |
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|econullnetr |0.1.0 | | | |
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|[epiflows](problems.md#epiflows) |0.2.0 | | |1 |
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|[fingertipscharts](problems.md#fingertipscharts) |0.0.3 |1 | |1 |
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|[GenVisR](problems.md#genvisr) |1.14.1 |2 |1 |4 |
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|getTBinR |0.5.6 | | | |
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|[ggcyto](problems.md#ggcyto) |1.10.0 |__+1__ | |3 |
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|[ggExtra](problems.md#ggextra) |0.8 | | |1 |
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|[ggformula](problems.md#ggformula) |0.9.0 |__+1__ | |3 |
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|gggenes |0.3.2 | | | |
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|ggperiodic |0.1.0 | | | |
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|[ggplot2](problems.md#ggplot2) |3.1.0 | | |2 |
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|[ggridges](problems.md#ggridges) |0.5.1 | | |1 |
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|ggstance |0.3.1 | | | |
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|[ggstatsplot](problems.md#ggstatsplot) |0.0.7 |2 | |1 |
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|[ggthemes](problems.md#ggthemes) |4.0.1 | | |1 |
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|ggvoronoi |0.8.2 | | | |
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|hrbrthemes |0.5.0.1 | | | |
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|incidence |1.5.2 | | | |
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|[metR](problems.md#metr) |0.2.0 | | |2 |
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|naniar |0.4.1 | | | |
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|olsrr |0.5.2 | | | |
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|pROC |1.13.0 | | | |
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|[projections](problems.md#projections) |0.3.1 | | |1 |
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|rcartocolor |0.0.22 | | | |
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|rfm |0.1.0 | | | |
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|[sicegar](problems.md#sicegar) |0.2.2 | | |1 |
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|[tidybayes](problems.md#tidybayes) |1.0.3 |1 | | |
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|treemapify |2.5.2 | | | |
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|[tsmp](problems.md#tsmp) |0.3.2 | | |1 |
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|[viridis](problems.md#viridis) |0.5.1 | | |1 |
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|[visdat](problems.md#visdat) |0.5.2 | | |1 |
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|wilson |2.0.2 | | | |
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|package |version |error |warning |note |
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|:-------|:-------|:-----|:-------|:----|
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|cicero |1.0.15 |1 | |1 |
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‎revdep/failures.md‎

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# cicero
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<details>
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* Version: 1.0.15
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* Source code: https://github.com/cran/cicero
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* Date/Publication: 2019-02-20
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* Number of recursive dependencies: 183
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Run `revdep_details(,"cicero")` for more info
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</details>
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## In both
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* R CMD check timed out
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* checking R code for possible problems ... NOTE
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```
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aggregate_nearby_peaks: no visible binding for global variable 'val'
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(/Users/lionel/Desktop/vdiffr/revdep/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/aggregate.R:37)
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assemble_connections: no visible binding for global variable 'value'
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(/Users/lionel/Desktop/vdiffr/revdep/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/runCicero.R:640-641)
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find_overlapping_ccans: no visible binding for global variable 'CCAN'
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(/Users/lionel/Desktop/vdiffr/revdep/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/runCicero.R:919-922)
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generate_windows: no visible binding for global variable 'V1'
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(/Users/lionel/Desktop/vdiffr/revdep/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/runCicero.R:663-667)
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plot_accessibility_in_pseudotime: no visible binding for global
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variable 'f_id'
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(/Users/lionel/Desktop/vdiffr/revdep/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/plotting.R:676-695)
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Undefined global functions or variables:
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CCAN f_id V1 val value
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```
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