repackage for auto pypi and docker build

Author: gijzelaerr

.gitignore

@@ -55,3 +55,5 @@ docs/_build/
 
 # PyBuilder
 target/
+
+MANIFEST

.travis.yml

@@ -0,0 +1,16 @@
+language: python
+sudo: false
+python:
+- '2.7'
+install:
+- python setup.py install
+script:
+- true
+deploy:
+  provider: pypi
+  user: gijzelaerr
+  password:
+    secure: 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
+  on:
+    tags: true
+    repo: radio-astro/sourcery

Dockerfile

@@ -0,0 +1,19 @@
+FROM radioastro/base:0.2
+
+MAINTAINER gijsmolenaar@gmail.com
+
+RUN apt-get update && \
+    apt-get install -y \
+        lofar \
+        python-numpy \
+        python-scipy \
+        python-astlib \
+        python-tigger \
+    &&  \
+    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+ADD . /tmp/sourcery
+
+RUN cd /tmp/sourcery && pip install .
+
+CMD python /usr/local/bin/sourcery

MANIFEST.in

@@ -0,0 +1,17 @@
+DOCKER_REPO=radioastro/sourcery:1.2.5
+
+.PHONY: build clean
+
+all: build
+
+build:
+	docker build -t ${DOCKER_REPO} .
+
+run:
+	docker run -ti ${DOCKER_REPO}
+
+clean:
+	docker rmi ${DOCKER_REPO}
+
+upload: build
+	docker push ${DOCKER_REPO}

Makefile

@@ -0,0 +1,73 @@
+========
+sourcery
+========
+
+Tools for creating high fidelity source catalogues from radio interferometric datasets.
+It also provides a tool for selecting sources responsible for artifacts in an image.
+
+Requires
+========
+
+ * pybdsm (part lofar software package)
+ * tigger
+ * numpy
+ * scipy
+ * astlib
+
+You can find ubuntu packages for tigger, astlib, lofar on `radio-astro ppa <https://launchpad.net/~radio-astro/+archive/ubuntu/main>`_. You may need to build the them source for other distributions, in that case find the source at the `ska-sa github repo <https://github.com/ska-sa>`_.
+
+
+Install
+=======
+
+Pip
+---
+
+::
+
+   $ pip install sourcery
+
+Direct build
+------------
+
+::
+
+    $ git clone github.com/SpheMakh/sourcery
+    $ cd sourcery
+    $ pip install .
+
+
+Running command 
+---------------
+
+Using defaults::
+
+    sourcery -i fitsimage -p psfimage  
+
+For changing parameters::
+   
+    sourcery -h
+
+If using config.json:  
+   
+ 1. Provide a -pref on the command line, e.g::
+
+    -prefix KAT7_DIRECTORY 
+  
+ 2. You can either provide image input name inside the config file or on the comand line.
+   In case you provide the input image inside the cofig.json only a single image can be executed per config file.
+   But if providing the input image on the command line then more than one image can be specified and exceuted.
+   One can use both the config file and the command line such as::
+   
+    sourcery -i kat7.fits,kat8.fits -p kat7psf.fits -jc config.json
+
+In which the parameter settings used are specified in config.json and the image to be executed are kat7.fits, kat8.fits etc.
+
+If using the command line alone then sourcery -h should be your friend. 
+Note more than one image can be specfied::
+
+    sourcery -i kat7.fits,kat8.fits -p kat7psf.fits
+
+The psf "kat7psf.fits" in this case will be used for both images, if each image has its own psf then provide this excplicitly as::
+     sourcery -i kat7.fits,kat8.fits -p kat7psf.fits,kat8psf.fits
+     

README.md

@@ -1 +1 @@
-__version__ = "0.1.8"
+__version__ = "0.2.5"

README.rst

@@ -1,19 +1,18 @@
 #!/usr/bin/env python
 
 import os
-from distutils.core import setup
+from setuptools import setup, find_packages
 import Sourcery
 
 setup(name="sourcery",
     version=Sourcery.__version__,
     description="Tools for creating high fidelity source catalogues from radio interferometric datasets",
     author="Lerato Sebokolodi",
-    author_email="Lerato Sebokolodi <mll.sebokolodi@gmail.com>",
-    url="https://github.com/sphemakh/sourcery",
-    packages=["Sourcery"],
-    requires=["numpy", "matplotlib", "scipy", "astlib", "pyfits", "tigger"],
+    author_email="mll.sebokolodi@gmail.com",
+    url="https://github.com/radio-astro/sourcery",
+    packages=find_packages(),
+    requires=["setuptools", "numpy", "matplotlib", "scipy", "astlib", "pyfits", "tigger"],
     scripts=["Sourcery/bin/" + i for i in os.listdir("Sourcery/bin")], 
-    licence="This program should come with the GNU General Public Licence. "\
-            "If not, find it at http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html",
+    license="GPL2",
     classifiers=[],
-     )
+ )