`get_variants(gene_name = ...)` doesn't return a variant showing at the GWAS Catalog page for this gene

[hdraisma]

> get_variants(gene_name = "KCNA3") doesn't return any data for the variant rs72681760, whereas this variant is listed at https://www.ebi.ac.uk/gwas/genes/KCNA3.

Having done some 'detective work' on my end, including browsing through the FAQ and previous Issues here, I'm currently inclined to think that this might be a symptom of a bug, but equally I might be missing something of course.

Thanks

[ramiromagno]

hi Harmen (@hdraisma):

Thank you for taking the time to report this issue.

I'm looking into it to see if it's a gwasrapidd bug or a GWAS Catalog discrepancy between the Web UI and the REST API. I will let you know as soon as I find it out.

[ramiromagno]

I believe this is an issue with the GWAS Catalog, and actually not just with that variant. I've sent an email to the GWAS Catalog team, and I will let you know when I hear from them again, most likely already this Monday.

[ramiromagno]

I just heard back from the GWAS Catalog about this issue and they confirm the discrepancy between the the Web UI and the REST API.

I will keep you posted.

[hdraisma]

Thank you so much, Ramiro, for having looked into this and for liaising with the GC team. I'm assuming you haven't had further updates from them, but I'm wondering whether you have any indication that they're going to try and resolve this (and if so, what would be the estimated timeline for this, of course)?

Many thanks again

Best regards
Harmen

[ramiromagno]

Hi Harmen,

I just pinged them for any updates on this.