Merge pull request #237 from raphael-group/gccorrect-fix

RunpengLuo · web-flow · commit 39b9ffab10e0 · 2025-02-26T10:58:02.000-05:00
fix type incompatible bug when nochr is used
diff --git a/src/hatchet/utils/rd_gccorrect.py b/src/hatchet/utils/rd_gccorrect.py
@@ -28,7 +28,8 @@ def rd_gccorrect(bb, ref_genome):
                 "3_usercol": "END",
                 "5_pct_gc": "GC",
             }
-        )[["#CHR", "START", "END", "GC"]]
+        )
+        .astype({"#CHR": str})[["#CHR", "START", "END", "GC"]]
     )
 
     # Correcting GC bias per sample

Original file line number	Diff line number	Diff line change
`@@ -28,7 +28,8 @@ def rd_gccorrect(bb, ref_genome):`
`28`	`28`	`"3_usercol": "END",`
`29`	`29`	`"5_pct_gc": "GC",`
`30`	`30`	`}`
`31`		`- )[["#CHR", "START", "END", "GC"]]`
	`31`	`+ )`
	`32`	`+ .astype({"#CHR": str})[["#CHR", "START", "END", "GC"]]`
`32`	`33`	`)`
`33`	`34`
`34`	`35`	`# Correcting GC bias per sample`