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sampler.py
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896 lines (774 loc) · 31.4 KB
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# SPDX-FileCopyrightText: Copyright (c) 2024-2026, NVIDIA CORPORATION.
# SPDX-License-Identifier: Apache-2.0
from typing import Optional, Iterator, Union, Dict, Tuple, List
from math import ceil
from cugraph_pyg.utils.imports import import_optional
from cugraph_pyg.sampler.distributed_sampler import DistributedNeighborSampler
from .sampler_utils import filter_cugraph_pyg_store, neg_sample, neg_cat
torch = import_optional("torch")
torch_geometric = import_optional("torch_geometric")
class SampleIterator:
"""
Iterator that combines output graphs with their
features to produce final output minibatches
that can be fed into a GNN model.
"""
def __init__(
self,
data: Tuple[
"torch_geometric.data.FeatureStore", "torch_geometric.data.GraphStore"
],
output_iter: Iterator[
Union[
"torch_geometric.sampler.HeteroSamplerOutput",
"torch_geometric.sampler.SamplerOutput",
]
],
):
"""
Constructs a new SampleIterator
Parameters
----------
data: Tuple[torch_geometric.data.FeatureStore, torch_geometric.data.GraphStore]
The original graph that samples were generated from, as a
FeatureStore/GraphStore tuple.
output_iter: Iterator[Union["torch_geometric.sampler.HeteroSamplerOutput",
"torch_geometric.sampler.SamplerOutput"]]
An iterator over outputted sampling results.
"""
self.__feature_store, self.__graph_store = data
self.__output_iter = output_iter
def __next__(self):
next_sample = next(self.__output_iter)
if isinstance(next_sample, torch_geometric.sampler.SamplerOutput):
sz = next_sample.edge.numel()
if sz == next_sample.col.numel() and (
next_sample.node.numel() > next_sample.col[-1]
):
# This will only trigger on very small batches and will have minimal
# performance impact. If COO output is removed, then this condition
# can be avoided.
col = next_sample.col
else:
col = torch_geometric.edge_index.ptr2index(
next_sample.col, next_sample.edge.numel()
)
data = filter_cugraph_pyg_store(
self.__feature_store,
self.__graph_store,
next_sample.node,
next_sample.row,
col,
next_sample.edge,
None,
)
"""
# TODO Re-enable this once PyG resolves
# the issue with edge features (9566)
data = torch_geometric.loader.utils.filter_custom_store(
self.__feature_store,
self.__graph_store,
next_sample.node,
next_sample.row,
col,
next_sample.edge,
None,
)
"""
if "n_id" not in data:
data.n_id = next_sample.node
if next_sample.edge is not None and "e_id" not in data:
edge = next_sample.edge.to(torch.long)
data.e_id = edge
data.batch = next_sample.batch
data.num_sampled_nodes = next_sample.num_sampled_nodes
data.num_sampled_edges = next_sample.num_sampled_edges
data.input_id = next_sample.metadata[0]
data.batch_size = data.input_id.size(0)
if len(next_sample.metadata) == 2:
data.seed_time = next_sample.metadata[1]
elif len(next_sample.metadata) == 4:
(
data.edge_label_index,
data.edge_label,
data.seed_time,
) = next_sample.metadata[1:]
else:
raise ValueError("Invalid metadata")
elif isinstance(next_sample, torch_geometric.sampler.HeteroSamplerOutput):
col = {}
for edge_type, col_idx in next_sample.col.items():
sz = next_sample.edge[edge_type].numel()
if sz == col_idx.numel():
col[edge_type] = col_idx
else:
col[edge_type] = torch_geometric.edge_index.ptr2index(col_idx, sz)
data = torch_geometric.loader.utils.filter_custom_hetero_store(
self.__feature_store,
self.__graph_store,
next_sample.node,
next_sample.row,
col,
next_sample.edge,
None,
)
for key, node in next_sample.node.items():
if "n_id" not in data[key]:
data[key].n_id = node
for key, edge in (next_sample.edge or {}).items():
if edge is not None and "e_id" not in data[key]:
edge = edge.to(torch.long)
data[key].e_id = edge
data.set_value_dict("batch", next_sample.batch)
data.set_value_dict("num_sampled_nodes", next_sample.num_sampled_nodes)
data.set_value_dict("num_sampled_edges", next_sample.num_sampled_edges)
# TODO figure out how to set input_id for heterogeneous output
input_type, input_id = next_sample.metadata[0]
data[input_type].input_id = input_id
data[input_type].batch_size = input_id.size(0)
if len(next_sample.metadata) == 2:
data[input_type].seed_time = next_sample.metadata[1]
elif len(next_sample.metadata) == 4:
(
data[input_type].edge_label_index,
data[input_type].edge_label,
data[input_type].seed_time,
) = next_sample.metadata[1:]
else:
raise ValueError("Invalid metadata")
else:
raise ValueError("Invalid output type")
return data
def __iter__(self):
return self
class SampleReader:
"""
Iterator that processes results from the cuGraph distributed sampler.
"""
def __init__(
self, base_reader: Iterator[Tuple[Dict[str, "torch.Tensor"], int, int]]
):
"""
Constructs a new SampleReader.
Parameters
----------
base_reader: Iterator[Tuple[Dict[str, "torch.Tensor"], int, int]]
The reader responsible for loading saved samples produced by
the cuGraph distributed sampler.
"""
self.__base_reader = base_reader
self.__num_samples_remaining = 0
self.__index = 0
def __next__(self):
if self.__num_samples_remaining == 0:
# raw_sample_data is already a dict of tensors
self.__raw_sample_data, start_inclusive, end_inclusive = next(
self.__base_reader
)
lho_name = (
"label_type_hop_offsets"
if "label_type_hop_offsets" in self.__raw_sample_data
else "label_hop_offsets"
)
self.__raw_sample_data["input_offsets"] -= self.__raw_sample_data[
"input_offsets"
][0].clone()
self.__raw_sample_data[lho_name] -= self.__raw_sample_data[lho_name][
0
].clone()
self.__raw_sample_data["renumber_map_offsets"] -= self.__raw_sample_data[
"renumber_map_offsets"
][0].clone()
if "major_offsets" in self.__raw_sample_data:
self.__raw_sample_data["major_offsets"] -= self.__raw_sample_data[
"major_offsets"
][0].clone()
self.__num_samples_remaining = end_inclusive - start_inclusive + 1
self.__index = 0
out = self._decode(self.__raw_sample_data, self.__index)
self.__index += 1
self.__num_samples_remaining -= 1
return out
def __iter__(self):
return self
class HeterogeneousSampleReader(SampleReader):
"""
Subclass of SampleReader that reads heterogeneous output samples
produced by the cuGraph distributed sampler.
"""
def __init__(
self,
base_reader: Iterator[Tuple[Dict[str, "torch.Tensor"], int, int]],
src_types: "torch.Tensor",
dst_types: "torch.Tensor",
vertex_offsets: "torch.Tensor",
edge_types: List[Tuple[str, str, str]],
vertex_types: List[str],
):
"""
Constructs a new HeterogeneousSampleReader
Parameters
----------
base_reader: Iterator[Tuple[Dict[str, "torch.Tensor"], int, int]]
The iterator responsible for loading saved samples produced by
the cuGraph distributed sampler.
src_types: torch.Tensor
Integer source type for each integer edge type.
dst_types: torch.Tensor
Integer destination type for each integer edge type.
vertex_offsets: torch.Tensor
Vertex offsets for each vertex type. Used to de-offset vertices
outputted by the cuGraph sampler and return PyG-compliant vertex
IDs.
edge_types: List[Tuple[str, str, str]]
List of edge types in the graph in order, so they can be
mapped to numeric edge types.
vertex_types: List[str]
List of vertex types, in order so they can be mapped to
numeric vertex types.
"""
self.__src_types = src_types
self.__dst_types = dst_types
self.__edge_types = edge_types
self.__vertex_types = vertex_types
self.__num_vertex_types = len(vertex_types)
self.__vertex_offsets = vertex_offsets
super().__init__(base_reader)
def __decode_coo(self, raw_sample_data: Dict[str, "torch.Tensor"], index: int):
num_edge_types = self.__src_types.numel()
fanout_length = raw_sample_data["fanout"].numel() // num_edge_types
num_sampled_nodes = [
torch.zeros((fanout_length + 1,), dtype=torch.int64, device="cuda")
for _ in range(self.__num_vertex_types)
]
num_sampled_edges = {}
node = {}
row = {}
col = {}
edge = {}
input_type = raw_sample_data["input_type"]
if input_type is None:
raise ValueError("No input type found!")
integer_input_type = None
for etype in range(num_edge_types):
pyg_can_etype = self.__edge_types[etype]
jx = self.__src_types[etype] + index * self.__num_vertex_types
map_ptr_src_beg = raw_sample_data["renumber_map_offsets"][jx]
map_ptr_src_end = raw_sample_data["renumber_map_offsets"][jx + 1]
map_src = raw_sample_data["map"][map_ptr_src_beg:map_ptr_src_end]
node[pyg_can_etype[0]] = (
map_src - self.__vertex_offsets[self.__src_types[etype]]
).cpu()
kx = self.__dst_types[etype] + index * self.__num_vertex_types
map_ptr_dst_beg = raw_sample_data["renumber_map_offsets"][kx]
map_ptr_dst_end = raw_sample_data["renumber_map_offsets"][kx + 1]
map_dst = raw_sample_data["map"][map_ptr_dst_beg:map_ptr_dst_end]
node[pyg_can_etype[2]] = (
map_dst - self.__vertex_offsets[self.__dst_types[etype]]
).cpu()
edge_ptr_beg = (
index * num_edge_types * fanout_length + etype * fanout_length
)
edge_ptr_end = (
index * num_edge_types * fanout_length + (etype + 1) * fanout_length
)
lho = raw_sample_data["label_type_hop_offsets"][
edge_ptr_beg : edge_ptr_end + 1
]
num_sampled_edges[pyg_can_etype] = (lho).diff()
eid_i = raw_sample_data["edge_id"][lho[0] : lho[-1]]
eirx = (index * num_edge_types) + etype
edge_id_ptr_beg = raw_sample_data["edge_renumber_map_offsets"][eirx]
edge_id_ptr_end = raw_sample_data["edge_renumber_map_offsets"][eirx + 1]
emap = raw_sample_data["edge_renumber_map"][edge_id_ptr_beg:edge_id_ptr_end]
edge[pyg_can_etype] = emap[eid_i]
col[pyg_can_etype] = raw_sample_data["majors"][lho[0] : lho[-1]]
row[pyg_can_etype] = raw_sample_data["minors"][lho[0] : lho[-1]]
for hop in range(fanout_length):
vx = raw_sample_data["majors"][: lho[hop + 1]]
if vx.numel() > 0:
num_sampled_nodes[self.__dst_types[etype]][hop + 1] = torch.max(
num_sampled_nodes[self.__dst_types[etype]][hop + 1],
vx.max() + 1,
)
vy = raw_sample_data["minors"][: lho[hop + 1]]
if vy.numel() > 0:
num_sampled_nodes[self.__src_types[etype]][hop + 1] = torch.max(
num_sampled_nodes[self.__src_types[etype]][hop + 1],
vy.max() + 1,
)
if input_type == pyg_can_etype:
# FIXME this is technically not the correct way to calculate the
# number of sampled nodes for hop 0, but it should not cause any
# issues during training since (presumably) the extra nodes will
# get pruned out (rapidsai/cugraph#5270).
integer_input_type = etype
# heterogeneous edges as input, two node types per edge type
ux = col[pyg_can_etype][: num_sampled_edges[pyg_can_etype][0]]
uy = row[pyg_can_etype][: num_sampled_edges[pyg_can_etype][0]]
uxn = (
(ux.max() + 1)
if ux.numel() > 0
else torch.tensor(0, device=ux.device)
)
num_sampled_nodes[self.__dst_types[etype]][0] = torch.max(
num_sampled_nodes[self.__dst_types[etype]][0],
uxn.reshape((1,)),
)
uyn = (
(uy.max() + 1)
if uy.numel() > 0
else torch.tensor(0, device=uy.device)
)
num_sampled_nodes[self.__src_types[etype]][0] = torch.max(
num_sampled_nodes[self.__src_types[etype]][0],
uyn.reshape((1,)),
)
elif isinstance(input_type, str) and input_type == pyg_can_etype[2]:
integer_input_type = self.__src_types[etype]
# homogeneous nodes as input
ux = col[pyg_can_etype][: num_sampled_edges[pyg_can_etype][0]]
if ux.numel() > 0:
num_sampled_nodes[self.__dst_types[etype]][0] = torch.max(
num_sampled_nodes[self.__dst_types[etype]][0],
(ux.max() + 1).reshape((1,)),
)
if integer_input_type is None:
raise ValueError("Input type did not match any edge type!")
num_sampled_nodes = {
self.__vertex_types[i]: z.diff(
prepend=torch.zeros((1,), dtype=torch.int64, device="cuda")
).cpu()
for i, z in enumerate(num_sampled_nodes)
}
num_sampled_edges = {k: v.cpu() for k, v in num_sampled_edges.items()}
input_index = raw_sample_data["input_index"][
raw_sample_data["input_offsets"][index] : raw_sample_data["input_offsets"][
index + 1
]
]
num_seeds = input_index.numel()
input_index = input_index[input_index >= 0]
num_pos = input_index.numel()
num_neg = num_seeds - num_pos
if num_neg > 0:
edge_label = torch.concat(
[
torch.full((num_pos,), 1.0),
torch.full((num_neg,), 0.0),
]
)
else:
if "input_label" in raw_sample_data:
edge_label = raw_sample_data["input_label"][
raw_sample_data["input_offsets"][index] : raw_sample_data[
"input_offsets"
][index + 1]
]
else:
edge_label = None
input_index = (
input_type,
input_index,
)
edge_inverse = (
(
raw_sample_data["edge_inverse"][
(raw_sample_data["input_offsets"][index] * 2) : (
raw_sample_data["input_offsets"][index + 1] * 2
)
]
)
if "edge_inverse" in raw_sample_data
else None
)
if edge_inverse is None:
metadata = (
input_index,
None, # TODO this will eventually include time
)
else:
edge_inverse = edge_inverse.view(2, -1)
if isinstance(input_type, str):
raise ValueError("Input type should be a tuple for edge input.")
else:
# De-offset the type based on lexicographic order
if input_type[0] != input_type[2]:
if input_type[0] < input_type[2]:
edge_inverse[1] -= edge_inverse[0].max() + 1
else:
edge_inverse[0] -= edge_inverse[1].max() + 1
metadata = (
input_index,
edge_inverse,
edge_label,
None, # TODO this will eventually include time
)
return torch_geometric.sampler.HeteroSamplerOutput(
node=node,
row=row,
col=col,
edge=edge,
batch=None,
num_sampled_nodes=num_sampled_nodes,
num_sampled_edges=num_sampled_edges,
metadata=metadata,
)
def _decode(
self,
raw_sample_data: Dict[str, Union["torch.Tensor", str, Tuple[str, str, str]]],
index: int,
):
if "major_offsets" in raw_sample_data:
raise ValueError(
"CSR format not currently supported for heterogeneous graphs"
)
else:
return self.__decode_coo(raw_sample_data, index)
class HomogeneousSampleReader(SampleReader):
"""
Subclass of SampleReader that reads homogeneous output samples
produced by the cuGraph distributed sampler.
"""
def __init__(
self, base_reader: Iterator[Tuple[Dict[str, "torch.Tensor"], int, int]]
):
"""
Constructs a new HomogeneousSampleReader
Parameters
----------
base_reader: Iterator[Tuple[Dict[str, "torch.Tensor"], int, int]]
The iterator responsible for loading saved samples produced by
the cuGraph distributed sampler.
"""
super().__init__(base_reader)
def __decode_csc(
self,
raw_sample_data: Dict[str, Union["torch.Tensor", str, Tuple[str, str, str]]],
index: int,
):
fanout_length = (raw_sample_data["label_hop_offsets"].numel() - 1) // (
raw_sample_data["renumber_map_offsets"].numel() - 1
)
major_offsets_start_incl = raw_sample_data["label_hop_offsets"][
index * fanout_length
]
major_offsets_end_incl = raw_sample_data["label_hop_offsets"][
(index + 1) * fanout_length
]
major_offsets = raw_sample_data["major_offsets"][
major_offsets_start_incl : major_offsets_end_incl + 1
].clone()
minors = raw_sample_data["minors"][major_offsets[0] : major_offsets[-1]]
edge_id = raw_sample_data["edge_id"][major_offsets[0] : major_offsets[-1]]
# don't retrieve edge type for a homogeneous graph
major_offsets -= major_offsets[0].clone()
renumber_map_start = raw_sample_data["renumber_map_offsets"][index]
renumber_map_end = raw_sample_data["renumber_map_offsets"][index + 1]
renumber_map = raw_sample_data["map"][renumber_map_start:renumber_map_end]
current_label_hop_offsets = raw_sample_data["label_hop_offsets"][
index * fanout_length : (index + 1) * fanout_length + 1
].clone()
current_label_hop_offsets -= current_label_hop_offsets[0].clone()
num_sampled_edges = major_offsets[current_label_hop_offsets].diff()
num_sampled_nodes_hops = torch.tensor(
[
minors[: num_sampled_edges[:i].sum()].max() + 1
for i in range(1, fanout_length + 1)
],
device="cpu",
)
num_seeds = (
torch.searchsorted(major_offsets, num_sampled_edges[0]).reshape((1,)).cpu()
)
num_sampled_nodes = torch.concat(
[num_seeds, num_sampled_nodes_hops.diff(prepend=num_seeds)]
)
input_index = raw_sample_data["input_index"][
raw_sample_data["input_offsets"][index] : raw_sample_data["input_offsets"][
index + 1
]
]
num_seeds = input_index.numel()
input_index = input_index[input_index >= 0]
num_pos = input_index.numel()
num_neg = num_seeds - num_pos
if num_neg > 0:
edge_label = torch.concat(
[
torch.full((num_pos,), 1.0),
torch.full((num_neg,), 0.0),
]
)
else:
if "input_label" in raw_sample_data:
edge_label = raw_sample_data["input_label"][
raw_sample_data["input_offsets"][index] : raw_sample_data[
"input_offsets"
][index + 1]
]
else:
edge_label = None
edge_inverse = (
(
raw_sample_data["edge_inverse"][
(raw_sample_data["input_offsets"][index] * 2) : (
raw_sample_data["input_offsets"][index + 1] * 2
)
]
)
if "edge_inverse" in raw_sample_data
else None
)
if edge_inverse is None:
metadata = (
input_index,
None, # TODO this will eventually include time
)
else:
edge_inverse = edge_inverse.view(2, -1)
metadata = (
input_index,
edge_inverse,
edge_label,
None, # TODO this will eventually include time
)
return torch_geometric.sampler.SamplerOutput(
node=renumber_map.cpu(),
row=minors,
col=major_offsets,
edge=edge_id.cpu(),
batch=renumber_map[:num_seeds],
num_sampled_nodes=num_sampled_nodes.cpu(),
num_sampled_edges=num_sampled_edges.cpu(),
metadata=metadata,
)
def __decode_coo(
self,
raw_sample_data: Dict[str, Union["torch.Tensor", str, Tuple[str, str, str]]],
index: int,
):
fanout_length = (raw_sample_data["label_hop_offsets"].numel() - 1) // (
raw_sample_data["renumber_map_offsets"].numel() - 1
)
major_minor_start = raw_sample_data["label_hop_offsets"][index * fanout_length]
ix_end = (index + 1) * fanout_length
if ix_end == raw_sample_data["label_hop_offsets"].numel():
major_minor_end = raw_sample_data["majors"].numel()
else:
major_minor_end = raw_sample_data["label_hop_offsets"][ix_end]
majors = raw_sample_data["majors"][major_minor_start:major_minor_end]
minors = raw_sample_data["minors"][major_minor_start:major_minor_end]
edge_id = raw_sample_data["edge_id"][major_minor_start:major_minor_end]
# don't retrieve edge type for a homogeneous graph
renumber_map_start = raw_sample_data["renumber_map_offsets"][index]
renumber_map_end = raw_sample_data["renumber_map_offsets"][index + 1]
renumber_map = raw_sample_data["map"][renumber_map_start:renumber_map_end]
num_sampled_edges = (
raw_sample_data["label_hop_offsets"][
index * fanout_length : (index + 1) * fanout_length + 1
]
.diff()
.cpu()
)
num_seeds = (majors[: num_sampled_edges[0]].max() + 1).reshape((1,)).cpu()
num_sampled_nodes_hops = torch.tensor(
[
minors[: num_sampled_edges[:i].sum()].max() + 1
for i in range(1, fanout_length + 1)
],
device="cpu",
)
num_sampled_nodes = torch.concat(
[num_seeds, num_sampled_nodes_hops.diff(prepend=num_seeds)]
)
input_index = raw_sample_data["input_index"][
raw_sample_data["input_offsets"][index] : raw_sample_data["input_offsets"][
index + 1
]
]
edge_inverse = (
(
raw_sample_data["edge_inverse"][
(raw_sample_data["input_offsets"][index] * 2) : (
raw_sample_data["input_offsets"][index + 1] * 2
)
]
)
if "edge_inverse" in raw_sample_data
else None
)
if edge_inverse is None:
metadata = (
input_index,
None, # TODO this will eventually include time
)
else:
edge_inverse = edge_inverse.view(2, -1)
metadata = (
input_index,
edge_inverse,
None,
None, # TODO this will eventually include time
)
return torch_geometric.sampler.SamplerOutput(
node=renumber_map.cpu(),
row=minors,
col=majors,
edge=edge_id,
batch=renumber_map[:num_seeds],
num_sampled_nodes=num_sampled_nodes,
num_sampled_edges=num_sampled_edges,
metadata=metadata,
)
def _decode(
self,
raw_sample_data: Dict[str, Union["torch.Tensor", str, Tuple[str, str, str]]],
index: int,
):
if "major_offsets" in raw_sample_data:
return self.__decode_csc(raw_sample_data, index)
else:
return self.__decode_coo(raw_sample_data, index)
class BaseSampler:
def __init__(
self,
sampler: DistributedNeighborSampler,
data: Tuple[
"torch_geometric.data.FeatureStore", "torch_geometric.data.GraphStore"
],
batch_size: int = 16,
):
self.__sampler = sampler
self.__feature_store, self.__graph_store = data
self.__batch_size = batch_size
def sample_from_nodes(
self, index: "torch_geometric.sampler.NodeSamplerInput", **kwargs
) -> Iterator[
Union[
"torch_geometric.sampler.HeteroSamplerOutput",
"torch_geometric.sampler.SamplerOutput",
]
]:
metadata = (
{
"input_type": index.input_type,
}
if index.input_type is not None
else None
)
reader = self.__sampler.sample_from_nodes(
index.node,
batch_size=self.__batch_size,
input_id=index.input_id,
input_time=index.time,
metadata=metadata,
**kwargs,
)
edge_attrs = self.__graph_store.get_all_edge_attrs()
if (
len(edge_attrs) == 1
and edge_attrs[0].edge_type[0] == edge_attrs[0].edge_type[2]
):
return HomogeneousSampleReader(reader)
else:
edge_types, src_types, dst_types = self.__graph_store._numeric_edge_types
return HeterogeneousSampleReader(
reader,
src_types=src_types,
dst_types=dst_types,
edge_types=edge_types,
vertex_types=sorted(self.__graph_store._num_vertices().keys()),
vertex_offsets=self.__graph_store._vertex_offset_array,
)
def sample_from_edges(
self,
index: "torch_geometric.sampler.EdgeSamplerInput",
neg_sampling: Optional["torch_geometric.sampler.NegativeSampling"] = None,
**kwargs,
) -> Iterator[
Union[
"torch_geometric.sampler.HeteroSamplerOutput",
"torch_geometric.sampler.SamplerOutput",
]
]:
src = index.row
dst = index.col
input_id = index.input_id
input_time = index.time
# TODO ensure this is handled correctly when disjoint sampling is implemented.
node_time = self.__graph_store._get_ntime_func()
neg_batch_size = 0
if neg_sampling:
# Sample every negative subset at once.
src_neg, dst_neg = neg_sample(
self.__graph_store,
index.row,
index.col,
index.input_type,
self.__batch_size,
neg_sampling,
index.time,
node_time,
)
if neg_sampling.is_binary():
src, _ = neg_cat(src.cuda(), src_neg, self.__batch_size)
else:
# triplet, cat random subset of src to src so length is the
# same; will result in the same set of unique vertices
scu = src.cuda()
per = torch.randint(
0, scu.numel(), (dst_neg.numel(),), device=scu.device
)
src, _ = neg_cat(scu, scu[per], self.__batch_size)
dst, neg_batch_size = neg_cat(dst.cuda(), dst_neg, self.__batch_size)
if node_time is not None and input_time is not None:
input_time, _ = neg_cat(
input_time.repeat_interleave(int(ceil(neg_sampling.amount))).cuda(),
input_time.cuda(),
self.__batch_size,
)
# Concatenate -1s so the input id tensor lines up and can
# be processed by the dist sampler.
# When loading the output batch, '-1' will be dropped.
input_id, _ = neg_cat(
input_id,
torch.full(
(dst_neg.numel(),), -1, dtype=torch.int64, device=input_id.device
),
self.__batch_size,
)
metadata = (
{
"input_type": index.input_type,
}
if index.input_type is not None
else None
)
# TODO for temporal sampling, node times have to be
# adjusted here.
reader = self.__sampler.sample_from_edges(
torch.stack([src, dst]), # reverse of usual convention
input_id=input_id,
input_time=input_time,
input_label=index.label,
batch_size=self.__batch_size + neg_batch_size,
metadata=metadata,
**kwargs,
)
edge_attrs = self.__graph_store.get_all_edge_attrs()
if (
len(edge_attrs) == 1
and edge_attrs[0].edge_type[0] == edge_attrs[0].edge_type[2]
):
return HomogeneousSampleReader(reader)
else:
edge_types, src_types, dst_types = self.__graph_store._numeric_edge_types
return HeterogeneousSampleReader(
reader,
src_types=src_types,
dst_types=dst_types,
edge_types=edge_types,
vertex_types=sorted(self.__graph_store._num_vertices().keys()),
vertex_offsets=self.__graph_store._vertex_offset_array,
)