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E-GEOD-59772.sdrf.txt
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10 lines (10 loc) · 6.3 KB
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Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [organism part]
GSM1446294 1 Tot3 breast cancer Total 3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Total tumor P-GSE59772-2 ArrayExpress GSM1446294 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446294 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446294 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446294_Tot3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446294_sample_table.txt norm GSM1446294_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Total tumor
GSM1446293 1 Str3 breast cancer Stroma 3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stroma P-GSE59772-2 ArrayExpress GSM1446293 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446293 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446293 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446293_Str3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446293_sample_table.txt norm GSM1446293_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Stroma
GSM1446292 1 Can3 breast cancer Cancer Cells 3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Cancer cells P-GSE59772-2 ArrayExpress GSM1446292 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446292 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446292 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446292_Can3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446292_sample_table.txt norm GSM1446292_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Cancer cells
GSM1446291 1 Tot2 breast cancer Total 2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Total tumor P-GSE59772-2 ArrayExpress GSM1446291 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446291 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446291 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446291_Tot2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446291_sample_table.txt norm GSM1446291_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Total tumor
GSM1446290 1 Str2 breast cancer Stroma 2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stroma P-GSE59772-2 ArrayExpress GSM1446290 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446290 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446290 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446290_Str2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446290_sample_table.txt norm GSM1446290_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Stroma
GSM1446289 1 Can2 breast cancer Cancer Cells 2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Cancer cells P-GSE59772-2 ArrayExpress GSM1446289 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446289 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446289 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446289_Can2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446289_sample_table.txt norm GSM1446289_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Cancer cells
GSM1446288 1 Tot1 breast cancer Total 1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Total tumor P-GSE59772-2 ArrayExpress GSM1446288 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446288 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446288 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446288_Tot1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446288_sample_table.txt norm GSM1446288_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Total tumor
GSM1446287 1 Str1 breast cancer Stroma 1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stroma P-GSE59772-2 ArrayExpress GSM1446287 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446287 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446287 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446287_Str1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446287_sample_table.txt norm GSM1446287_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Stroma
GSM1446286 1 Can1 breast cancer Cancer Cells 1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Cancer cells P-GSE59772-2 ArrayExpress GSM1446286 extract 1 total RNA P-GSE59772-3 ArrayExpress GSM1446286 LE 1 biotin P-GSE59772-4 ArrayExpress GSM1446286 A-AFFY-141 ArrayExpress array assay P-GSE59772-5 ArrayExpress GSM1446286_Can1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.raw.1.zip P-GSE59772-1 ArrayExpress GSM1446286_sample_table.txt norm GSM1446286_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59772/E-GEOD-59772.processed.1.zip Cancer cells