DeepSpot/CITATION.cff at main · ratschlab/DeepSpot · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
cff-version: 1.2.0
title: "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"
message: "If you use DeepSpot, please cite it using the metadata from this file."
type: software
authors:
  - given-names: Kalin
    family-names: Nonchev
    orcid: https://orcid.org/0009-0001-4904-8772
  - given-names: Sebastian
    family-names: Dawo
  - given-names: Karina
    family-names: Silina
  - given-names: Holger
    family-names: Moch
  - given-names: Sonali
    family-names: Andani
  - name: Tumor Profiler Consortium
  - given-names: Viktor H.
    family-names: Koelzer
  - given-names: Gunnar
    family-names: Rätsch
repository-code: https://github.com/ratschlab/DeepSpot
url: https://www.medrxiv.org/content/10.1101/2025.02.09.25321567v3
license: MIT
version: 1.0.0
date-released: "2025-02-09"
keywords:
  - spatial-transcriptomics
  - deep-learning
  - computational-pathology
  - digital-pathology
  - gene-expression-prediction
  - histopathology
  - visium
  - xenium
  - foundation-models
  - single-cell
  - cancer-research
  - pytorch
  - spatial-biology
identifiers:
  - type: doi
    value: 10.1101/2025.02.09.25321567
    description: medRxiv preprint
preferred-citation:
  type: article
  title: "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"
  authors:
    - given-names: Kalin
      family-names: Nonchev
    - given-names: Sebastian
      family-names: Dawo
    - given-names: Karina
      family-names: Silina
    - given-names: Holger
      family-names: Moch
    - given-names: Sonali
      family-names: Andani
    - name: Tumor Profiler Consortium
    - given-names: Viktor H.
      family-names: Koelzer
    - given-names: Gunnar
      family-names: Rätsch
  doi: 10.1101/2025.02.09.25321567
  url: https://www.medrxiv.org/content/10.1101/2025.02.09.25321567v3
  journal: medRxiv
  year: 2025