DeepSpot/pyproject.toml at main · ratschlab/DeepSpot · GitHub

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[build-system]
requires = ["setuptools>=64", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "deepspot"
version = "1.0.0"
description = "DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images"
readme = "README.md"
license = "MIT"
requires-python = ">=3.9"
authors = [
    {name = "Kalin Nonchev"},
]
keywords = [
    "spatial-transcriptomics",
    "deep-learning",
    "computational-pathology",
    "digital-pathology",
    "gene-expression",
    "histopathology",
    "visium",
    "xenium",
    "foundation-models",
    "single-cell",
    "pytorch",
    "spatial-biology",
    "cancer-research",
    "bioinformatics",
]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
]

[project.urls]
Homepage = "https://github.com/ratschlab/DeepSpot"
Repository = "https://github.com/ratschlab/DeepSpot"
Documentation = "https://github.com/ratschlab/DeepSpot#getting-started"
"Bug Tracker" = "https://github.com/ratschlab/DeepSpot/issues"
"Preprint" = "https://www.medrxiv.org/content/10.1101/2025.02.09.25321567v3"
"Dataset" = "https://huggingface.co/datasets/nonchev/TCGA_digital_spatial_transcriptomics"
"Pretrained Models" = "https://zenodo.org/records/15322099"