Bugfix to address log4j security vulnerability - version 4.4.1 (#100) (#101)

* Bugfix to address log4j security vulnerability - version 4.4.1 (#100)

OPSIN has addressed a security vulnerability (CVE-2021-44228) documented
in issue dan2097/opsin#174 - To package this
for the RDKit nodes we now use OPSIN 3.0 (beta) build on master commit
6aca244.
This includes then naturally also improvements between 2.5 and 3.0
(committed until Dec 11, 2021).

Bumped version to from 4.4.0 to 4.4.1.

* Fixed pom.xml version to 4.4.1 (must be in sync with plugin versions)

Author: manuelschwarze

org.rdkit.knime.bin.linux.x86_64/META-INF/MANIFEST.MF

@@ -2,8 +2,8 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: RDKit binaries for 64bit Linux
 Bundle-SymbolicName: org.rdkit.knime.bin.linux.x86_64;singleton:=true
-Bundle-Version: 4.4.0.qualifier
-Fragment-Host: org.rdkit.knime.types;bundle-version="4.4.0"
+Bundle-Version: 4.4.1.qualifier
+Fragment-Host: org.rdkit.knime.types;bundle-version="4.4.1"
 Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Eclipse-PlatformFilter: (&(osgi.os=linux)(osgi.arch=x86_64))
 Bundle-Vendor: NIBR

org.rdkit.knime.bin.macosx.x86_64/META-INF/MANIFEST.MF

@@ -2,8 +2,8 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: RDKit binaries for 64bit MacOSX
 Bundle-SymbolicName: org.rdkit.knime.bin.macosx.x86_64;singleton:=true
-Bundle-Version: 4.4.0.qualifier
-Fragment-Host: org.rdkit.knime.types;bundle-version="4.4.0"
+Bundle-Version: 4.4.1.qualifier
+Fragment-Host: org.rdkit.knime.types;bundle-version="4.4.1"
 Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Eclipse-PlatformFilter: (&(osgi.os=macosx)(osgi.arch=x86_64))
 Bundle-Vendor: NIBR

org.rdkit.knime.bin.win32.x86_64/META-INF/MANIFEST.MF

@@ -2,8 +2,8 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: RDKit binaries for 64bit Windows
 Bundle-SymbolicName: org.rdkit.knime.bin.win32.x86_64;singleton:=true
-Bundle-Version: 4.4.0.qualifier
-Fragment-Host: org.rdkit.knime.types;bundle-version="4.4.0"
+Bundle-Version: 4.4.1.qualifier
+Fragment-Host: org.rdkit.knime.types;bundle-version="4.4.1"
 Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Eclipse-PlatformFilter: (&(osgi.os=win32)(osgi.arch=x86_64))
 Bundle-Vendor: NIBR

org.rdkit.knime.binaries.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.rdkit.knime.binaries.feature"
       label="RDKit Binaries and Chemistry Type Definitions Feature"
-      version="4.4.0.qualifier"
+      version="4.4.1.qualifier"
       provider-name="NIBR">
 
    <description>

org.rdkit.knime.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.rdkit.knime.feature"
       label="RDKit Nodes Feature"
-      version="4.4.0.qualifier"
+      version="4.4.1.qualifier"
       provider-name="NIBR"
       plugin="org.rdkit.knime.nodes">
 

org.rdkit.knime.nodes/META-INF/MANIFEST.MF

@@ -3,14 +3,14 @@ Bundle-ManifestVersion: 2
 Bundle-Name: RDKit Nodes
 Bundle-SymbolicName: org.rdkit.knime.nodes;singleton:=true
 Automatic-Module-Name: org.rdkit.knime.nodes
-Bundle-Version: 4.4.0.qualifier
+Bundle-Version: 4.4.1.qualifier
 Bundle-Vendor: NIBR
 Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Require-Bundle: org.eclipse.ui;bundle-version="[3.109.0,4.0.0)",
  org.knime.base;bundle-version="[4.2.0,5.0.0)",
  org.knime.chem.types;bundle-version="[4.2.0,5.0.0)",
  org.knime.workbench.repository;bundle-version="[4.2.0,5.0.0)",
- org.rdkit.knime.types;bundle-version="[4.4.0,5.0.0)",
+ org.rdkit.knime.types;bundle-version="[4.4.1,5.0.0)",
  org.knime.ext.svg;bundle-version="[4.2.0,5.0.0)"
 Export-Package: org.rdkit.knime.nodes,
  org.rdkit.knime.nodes.addconformers,
@@ -61,5 +61,5 @@ Export-Package: org.rdkit.knime.nodes,
 Bundle-Activator: org.rdkit.knime.nodes.RDKitNodePlugin
 Bundle-ActivationPolicy: lazy
 Bundle-ClassPath: .,
- lib/opsin-2.5.0-excludingInChI-jar-with-dependencies.jar
+ lib/opsin-core-3.0-excludingInChI-jar-with-dependencies.jar
 Import-Package: org.w3c.dom.events;version="3.0.0"

org.rdkit.knime.nodes/build.properties

@@ -4,7 +4,7 @@ output.. = bin/
 bin.includes = META-INF/,\
                .,\
                plugin.xml,\
-               lib/opsin-2.5.0-excludingInChI-jar-with-dependencies.jar,\
+               lib/opsin-core-3.0-excludingInChI-jar-with-dependencies.jar,\
                icons/
-jars.extra.classpath = lib/opsin-2.5.0-excludingInChI-jar-with-dependencies.jar,\
+jars.extra.classpath = lib/opsin-core-3.0-excludingInChI-jar-with-dependencies.jar,\
 					   platform:/plugin/org.rdkit.knime.types/lib/org.RDKit.jar

org.rdkit.knime.nodes/lib/opsin-2.5.0-excludingInChI-jar-with-dependencies.jar

@@ -2,7 +2,7 @@
 <feature
       id="org.rdkit.knime.testing.feature"
       label="RDKit Nodes Tests Feature"
-      version="4.4.0.qualifier"
+      version="4.4.1.qualifier"
       provider-name="NIBR">
 
    <description>