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| 1 | +#!/usr/bin/env python3 |
| 2 | + |
| 3 | +# /// script |
| 4 | +# requires-python = ">=3.11" |
| 5 | +# dependencies = [ |
| 6 | +# "click==8.1.8", |
| 7 | +# "pandas==2.2.3", |
| 8 | +# "rich==14.0.0", |
| 9 | +# "ucimlrepo==0.0.7", |
| 10 | +# ] |
| 11 | +# /// |
| 12 | + |
| 13 | +import logging |
| 14 | +import sys |
| 15 | +from dataclasses import dataclass, field |
| 16 | +from enum import IntEnum, StrEnum, auto |
| 17 | +from pprint import pformat |
| 18 | + |
| 19 | +import click |
| 20 | +import pandas as pd |
| 21 | +from rich.console import Console, Text |
| 22 | +from rich.logging import RichHandler |
| 23 | +from rich.table import Table |
| 24 | +from ucimlrepo import fetch_ucirepo |
| 25 | + |
| 26 | +logging.basicConfig( |
| 27 | + level=logging.INFO, |
| 28 | + format="%(levelname)s - %(message)s", |
| 29 | + handlers=[RichHandler(rich_tracebacks=True)], |
| 30 | +) |
| 31 | + |
| 32 | + |
| 33 | +class UCIDataset(IntEnum): |
| 34 | + IRIS = 53 |
| 35 | + |
| 36 | + |
| 37 | +class IrisVariable(StrEnum): |
| 38 | + PETAL_LENGTH = "petal length" |
| 39 | + PETAL_WIDTH = "petal width" |
| 40 | + SEPAL_WIDTH = "sepal width" |
| 41 | + SEPAL_LENGTH = "sepal length" |
| 42 | + |
| 43 | + |
| 44 | +class Operation(StrEnum): |
| 45 | + SUMMARY = auto() |
| 46 | + METADATA = auto() |
| 47 | + |
| 48 | + |
| 49 | +@dataclass |
| 50 | +class DescriptiveStatistics: |
| 51 | + data: pd.Series |
| 52 | + mean: float = field(init=False) |
| 53 | + median: float = field(init=False) |
| 54 | + mm_diff: float = field(init=False) |
| 55 | + |
| 56 | + def __post_init__(self): |
| 57 | + if not isinstance(self.data, pd.Series): |
| 58 | + raise TypeError( |
| 59 | + f"data must be a pandas Series, not {type(self.data)}" |
| 60 | + ) |
| 61 | + self.mean = self.data.mean() |
| 62 | + self.median = self.data.median() |
| 63 | + self.mm_diff = self.mean - self.median |
| 64 | + |
| 65 | + def __str__(self): |
| 66 | + return pformat(self) |
| 67 | + |
| 68 | + |
| 69 | +@click.command() |
| 70 | +@click.option( |
| 71 | + "--operation", |
| 72 | + default=Operation.SUMMARY, |
| 73 | + type=click.Choice(Operation), |
| 74 | + help="Operation to perform: variable summary or dataset metadata", |
| 75 | +) |
| 76 | +@click.option( |
| 77 | + "--variable", |
| 78 | + type=click.Choice(IrisVariable), |
| 79 | + help="Variable to summarize.", |
| 80 | + required=False, |
| 81 | +) |
| 82 | +def main(operation, variable): |
| 83 | + """Fetch the Iris dataset from UCI.""" |
| 84 | + iris = fetch_iris() |
| 85 | + if operation is Operation.SUMMARY: |
| 86 | + if variable: |
| 87 | + table = generate_table(iris, variable) |
| 88 | + logging.info(format_rich_for_log(table)) |
| 89 | + logging.info(f"{IrisVariable(variable)} summary:") |
| 90 | + logging.info( |
| 91 | + DescriptiveStatistics( |
| 92 | + iris.data.features[IrisVariable(variable).value] |
| 93 | + ) |
| 94 | + ) |
| 95 | + else: |
| 96 | + logging.info("All variables:") |
| 97 | + logging.info(pformat(iris.variables)) |
| 98 | + elif operation is Operation.METADATA: |
| 99 | + logging.info("Metadata summary:") |
| 100 | + logging.info(pformat(iris.metadata)) |
| 101 | + |
| 102 | + |
| 103 | +def fetch_iris(): |
| 104 | + """Return the Iris dataset from the UCI ML Repository.""" |
| 105 | + logging.info("Fetching Iris dataset...") |
| 106 | + try: |
| 107 | + iris_data = fetch_ucirepo(id=UCIDataset.IRIS.value) |
| 108 | + assert ( |
| 109 | + "data" in iris_data.keys() |
| 110 | + ), "Object does not have expected structure" |
| 111 | + except Exception as e: |
| 112 | + logging.critical(f"Failed to correctly fetch Iris dataset: {e}") |
| 113 | + sys.exit(1) |
| 114 | + else: |
| 115 | + logging.info("Iris dataset fetched successfully") |
| 116 | + return iris_data |
| 117 | + |
| 118 | + |
| 119 | +def generate_table(dataset, variable): |
| 120 | + """Generate a formatted table of descriptive statistics for a variable.""" |
| 121 | + column = IrisVariable(variable).value |
| 122 | + stats = DescriptiveStatistics(dataset.data.features[column]) |
| 123 | + table = Table(title=f"{column} summary") |
| 124 | + table.add_column("Metric", style="cyan", justify="right") |
| 125 | + table.add_column("Value", style="magenta") |
| 126 | + table.add_row("Mean", f"{stats.mean:.2f}") |
| 127 | + table.add_row("Median", f"{stats.median:.2f}") |
| 128 | + table.add_row("Mean-Median Diff", f"{stats.mm_diff:.2f}") |
| 129 | + return table |
| 130 | + |
| 131 | + |
| 132 | +def format_rich_for_log(renderable, width=100): |
| 133 | + """Render a rich object to a plain text string suitable for logging.""" |
| 134 | + console = Console(width=width) |
| 135 | + with console.capture() as capture: |
| 136 | + console.print(renderable) |
| 137 | + return Text.from_ansi(capture.get()) |
| 138 | + |
| 139 | + |
| 140 | +if __name__ == "__main__": |
| 141 | + main() |
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