removed print bc it pollutes logs

Author: okraus

efaar_benchmarking/benchmarking.py

@@ -911,11 +911,10 @@ def compound_gene_benchmark(
     """
     config = config or BenchmarkConfig()
     truth = truth_data if truth_data is not None else load_truth_data(benchmark_data_dir)
-    print(f"shape of original annotations {truth.shape}")
     # filter truth relationships for genes & compounds in [filtered] metadata
-    truth = truth[truth.gene_symbol.isin(map_data.metadata.perturbation) & 
-                  truth.treatment.isin(map_data.metadata.perturbation)]
-    print(f"shape of filteredgit annotations {truth.shape}")              
+    truth = truth[
+        truth.gene_symbol.isin(map_data.metadata.perturbation) & truth.treatment.isin(map_data.metadata.perturbation)
+    ]
     similarities = compute_similarities(truth, map_data, pert_col, randomize=check_random)
 
     thresholds = (activity_threshold, inactivity_threshold)