Reconfigure tutorials (lmu-osc#341)

* Include yaml files in the collection for training tutorials

* Transfer data management tutorials to yaml format

* Move study planning tutorials to yaml

* Use metadata file for reproducible processes tutorials

* Use metadata appraoch for publishing outputs

* Create skeleton for principles folder

* Create correct sidebar navigation for tutorials in qmd and yaml files

* Use more robust listing approach for top-level tutorial groupings

Author: NeuroShepherd

_quarto.yml

@@ -86,19 +86,29 @@ website:
               contents:
                 - text: "Principles"
                   href: training/principles/index.qmd
-                  contents: training/principles/*
+                  contents: 
+                    - auto: "training/principles/*.qmd"
+                    - training/principles/principles-tutorials.yaml
                 - text: "Study Planning"
                   href: training/study_planning/index.qmd
-                  contents: training/study_planning/*
+                  contents: 
+                    - auto: "training/study_planning/*.qmd"
+                    - training/study_planning/study-planning-tutorials.yaml
                 - text: "Data Management"
                   href: training/data_management/index.qmd
-                  contents: training/data_management/*
+                  contents: 
+                    - auto: "training/data_management/*.qmd"
+                    - training/data_management/data-management-tutorials.yaml
                 - text: "Reproducible Processes"
                   href: training/reproducible_processes/index.qmd
-                  contents: training/reproducible_processes/*
+                  contents: 
+                    - auto: "training/reproducible_processes/*.qmd"
+                    - training/reproducible_processes/reproducible-processes-tutorials.yaml
                 - text: "Publishing Outputs"
                   href: training/publishing_outputs/index.qmd
-                  contents: training/publishing_outputs/*
+                  contents: 
+                    - auto: "training/publishing_outputs/*.qmd"
+                    - training/publishing_outputs/publishing-outputs-tutorials.yaml
             - text: "Open Research Cycle"
               href: training/open_research_cycle.qmd
             - text: "Train the Trainer"

training/data_management/data-management-tutorials.yaml

@@ -0,0 +1,44 @@
+
+- title: "FAIR Data Management"
+  description: "Take steps towards making your data FAIR: **F**indable, **A**ccessible, **I**nteroperable, **R**eusable"
+  image: "../images/fair data management.svg"
+  categories:
+    - FAIR data
+    - Data management
+    - Documentation
+  content_category:
+    - Data Management
+  within_cat_order: 20
+  path: "https://lmu-osc.github.io/FAIR-Data-Management/"
+
+- title: "Data Dictionary"
+  description: "Tutorial in progress..."
+  image: "../images/data dictionary.svg"
+  categories:
+    - Documentation
+  content_category:
+    - Data Management
+  within_cat_order: 30
+  path: https://lmu-osc.github.io/Collaborative-RStudio-GitHub/
+
+
+- title: "TBD: Data Anonymity"
+  description: "Tutorial in progress..."
+  image: "../images/data anonymity.svg"
+  categories:
+    - Data anonymity
+  content_category:
+    - Data Management
+  within_cat_order: 50
+  path: https://lmu-osc.github.io/
+
+- title: "TBD: Generating Synthetic Data"
+  description: "Tutorial in progress..."
+  image: "../images/synthetic data.svg"
+  categories:
+    - Data simulation
+    - Data anonymity
+  content_category:
+    - Data Management
+  within_cat_order: 60
+  path: https://lmu-osc.github.io/synthetic-data-tutorial/

training/data_management/data_anonymity.qmd

@@ -11,6 +11,10 @@ categories:
 
 listing:
   type: default
+  contents:
+    - /**.qmd
+    - data-management-tutorials.yaml
+  fields: [title, description, categories, image]
   sort:
     - within_cat_order
 ---

training/data_management/data_dictionary.qmd

@@ -8,6 +8,10 @@ categories:
   - Open research practices
 listing:
   type: default
+  contents:
+    - /**.qmd
+    # - principles-tutorials.yaml   # uncomment this line when tutorials are added to the principles-tutorials.yaml file
+  fields: [title, description, categories, image]
   sort:
     - within_cat_order
 ---

training/data_management/fair_data_management.qmd

@@ -0,0 +1,6 @@
+
+# use this file to define tutorials in the "principles" section that 
+# should not have their own page for e.g. an embedded video or other content
+
+# NOTE: if you add tutorials here, be sure to also update training/self_training.qmd
+# to remove the line "- "!principles/principles-tutorials.yaml""