Merge pull request #1989 from rsarm/tutorial/eb

Vasileios Karakasis · web-flow · commit 9fad84ca8f1f · 2021-07-14T22:42:20.000+02:00
[doc] Add tutorial to showcase the use of build automation tools through ReFrame
diff --git a/ci-scripts/ci-runner.bash b/ci-scripts/ci-runner.bash
@@ -41,8 +41,8 @@ checked_exec()
 
 run_tutorial_checks()
 {
-    cmd="./bin/reframe -C tutorials/config/settings.py -J account=jenscscs \
---save-log-files --flex-alloc-nodes=2 -r -x HelloThreadedExtendedTest $@"
+    cmd="./bin/reframe -vv -C tutorials/config/settings.py -J account=jenscscs \
+--save-log-files --flex-alloc-nodes=2 -r -x HelloThreadedExtendedTest|BZip2.*Check $@"
     echo "[INFO] Running tutorial checks with \`$cmd'"
     checked_exec $cmd
 }
diff --git a/docs/tutorial_build_automation.rst b/docs/tutorial_build_automation.rst
@@ -0,0 +1,183 @@
+==========================================================
+Tutorial 5: Using Build Automation Tools As a Build System
+==========================================================
+
+In this tutorial we will present how to use `Easybuild <https://easybuild.io/>`__ and `Spack <https://spack.io/>`__ as a build system for a ReFrame test.
+The example uses the configuration file presented in :doc:`tutorial_basics`, which you can find in ``tutorials/config/settings.py``.
+We also assume that the reader is already familiar with the concepts presented in the basic tutorial and has a working knowledge of EasyBuild and Spack.
+Finally, to avoid specifying the tutorial configuration file each time you run the test, make sure to export it here:
+
+.. code:: bash
+
+   export RFM_CONFIG_FILE=$(pwd)/tutorials/config/mysettings.py
+
+
+
+Using EasyBuild to Build the Test Code
+--------------------------------------
+
+.. versionadded:: 3.5.0
+
+
+Let's consider a simple ReFrame test that installs ``bzip2-1.0.6`` given the easyconfig `bzip2-1.0.6.eb <https://github.com/eth-cscs/production/blob/master/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6.eb>`__ and checks that the installed version is correct.
+The following code block shows the check, highlighting the lines specific to this tutorial:
+
+.. literalinclude:: ../tutorials/build_systems/easybuild/eb_test.py
+   :lines: 6-
+   :emphasize-lines: 12,14-17,19-21
+
+The test looks pretty standard except for the highlighted blocks.
+Let's have a look first to the block in the :class:`BZip2Check` class.
+
+The first thing is to specify that the EasyBuild build system will be used.
+This is done by setting :attr:`~reframe.core.pipeline.RegressionTest.build_system` to ``'EasyBuild'``.
+Then, the software to be installed is passed as a list to :attr:`~reframe.core.buildsystems.EasyBuild.easyconfigs`.
+Here only one easyconfig is given, but more than one can be passed.
+Finally, through :attr:`~reframe.core.buildsystems.EasyBuild.options`, command line options can be passed to the ``eb`` executable.
+In this test we pass ``-f`` to make sure that ``bzip2`` will be built even if the module already exists externally.
+
+For this test, ReFrame generates the following command to build and install the easyconfig:
+
+.. code-block:: console
+
+   export EASYBUILD_BUILDPATH={stagedir}/easybuild/build
+   export EASYBUILD_INSTALLPATH={stagedir}/easybuild
+   export EASYBUILD_PREFIX={stagedir}/easybuild
+   export EASYBUILD_SOURCEPATH={stagedir}/easybuild
+   eb bzip2-1.0.6.eb -f
+
+ReFrame will keep all the files generated by EasyBuild (sources, temporary files, installed software and the corresponding modules) under the test's stage directory.
+For this reason it sets the relevant EasyBuild environment variables.
+
+.. tip::
+
+   Users may set the EasyBuild prefix to a different location by setting the :attr:`~reframe.core.buildsystems.EasyBuild.prefix` attribute of the build system.
+   This allows you to have the built software installed upon successful completion of the build phase, but if the test fails in a later stage (sanity, performance), the installed software will not be cleaned up automatically.
+
+.. note::
+
+   ReFrame assumes that the ``eb`` executable is available on the system where the compilation is run (typically the local host where ReFrame is executed).
+
+
+Now that we know everything related to building and installing the code, we can move to the part dealing with running it.
+To run the code, the generated modules need to be loaded in order to make the software available.
+The modules can be accessed through :attr:`~reframe.core.buildsystems.Easybuild.generated_modules`, however, they are available only after EasyBuild completes the installation.
+This means that :attr:`~reframe.core.pipeline.RegressionTest.modules` can be set only after the build phase finishes.
+For that, we can set :attr:`~reframe.core.pipeline.RegressionTest.modules` in a class method wrapped by the :py:func:`~reframe.core.RegressionTest.run_before` built-in, specifying the ``run`` phase.
+This test will then run the following commands:
+
+.. code-block:: console
+
+   module load bzip/1.0.6
+   bzip2 --help
+
+
+--------------------------
+Packaging the installation
+--------------------------
+
+The EasyBuild build system offers a way of packaging the installation via EasyBuild's packaging support.
+To use this feature, `the FPM package manager <https://fpm.readthedocs.io/en/latest/intro.html>`__ must be available.
+By setting the dictionary :attr:`~reframe.core.buildsystems.Easybuild.package_opts` in the test, ReFrame will pass ``--package-{key}={val}`` to the EasyBuild invocation.
+For instance, the following can be set to package the installations as an rpm file:
+
+.. code-block:: python
+
+   self.keep_files = ['easybuild/packages']
+   self.build_system.package_opts = {
+       'type': 'rpm',
+   }
+
+The packages are generated by EasyBuild in the stage directory.
+To retain them after the test succeeds, :attr:`~reframe.core.pipeline.RegressionTest.keep_files` needs to be set.
+
+
+
+Using Spack to Build the Test Code
+----------------------------------
+
+
+.. versionadded:: 3.6.1
+
+
+This example is the equivalent to the previous one, except that it uses Spack to build ``bzip2``.
+Here is the test's code:
+
+.. literalinclude:: ../tutorials/build_systems/spack/spack_test.py
+   :lines: 6-
+   :emphasize-lines: 12,14-16
+
+
+When :attr:`~reframe.core.pipeline.RegressionTest.build_system` is set to ``'Spack'``, ReFrame will leverage Spack environments in order to build the test code.
+For this reason, currently, users must specify an environment.
+ReFrame treats Spack environments as *test resources* so it expects to find them under the test's :attr:`~reframe.core.pipeline.RegressionTest.sourcesdir`, which defaults to ``'src'``.
+Here is the directory structure for the test in this particular example that we show here:
+
+.. code:: console
+
+   tutorials/build_systems/spack/
+   ├── spack_test.py
+   └── src
+       └── myenv
+           └── spack.yaml
+
+
+We could have placed ``spack.yaml`` directly under the ``src/`` directory, in which case we would need to specify ``'.'`` as an environment.
+For reference, here are the contents of ``spack.yaml``:
+
+.. literalinclude:: ../tutorials/build_systems/spack/src/myenv/spack.yaml
+
+
+As with every other test, ReFrame will copy the test's resources to its stage directory before building it.
+ReFrame will then activate the environment and install the associated specs as in this case.
+Optionally, we can add more specs to the environment by setting the :attr:`~reframe.core.buildsystems.Spack.specs` attribute of the build system.
+Here is what ReFrame generates as a build script in this example:
+
+.. code:: bash
+
+   . $SPACK_ROOT/share/spack/setup-env.sh
+   spack env activate -V -d myenv
+   spack install
+
+Any additional specs specified inside the ReFrame test will be added using the ``spack add`` command.
+As you might have noticed ReFrame expects that Spack is already installed on the system.
+The packages specified in the environment and the tests will be installed in the test's stage directory, where the environment is copied before building.
+Here is the stage directory structure:
+
+.. code:: console
+
+   stage/generic/default/builtin/BZip2SpackCheck/
+   ├── myenv
+   │   ├── spack
+   │   │   ├── opt
+   │   │   │   └── spack
+   │   │   │       ├── bin
+   │   │   │       └── darwin-catalina-skylake
+   │   │   └── share
+   │   │       └── spack
+   │   │           └── modules
+   │   ├── spack.lock
+   │   └── spack.yaml
+   ├── rfm_BZip2SpackCheck_build.err
+   ├── rfm_BZip2SpackCheck_build.out
+   ├── rfm_BZip2SpackCheck_build.sh
+   ├── rfm_BZip2SpackCheck_job.err
+   ├── rfm_BZip2SpackCheck_job.out
+   └── rfm_BZip2SpackCheck_job.sh
+
+
+Finally, here is the generated run script that ReFrame uses to run the test, once its build has succeeded:
+
+.. code-block:: bash
+
+   #!/bin/bash
+   . $SPACK_ROOT/share/spack/setup-env.sh
+   spack env activate -V -d myenv
+   bzip2 --help
+
+From this point on, sanity and performance checking are exactly identical to any other ReFrame test.
+
+.. tip::
+
+   While developing a test using Spack or EasyBuild as a build system, it can be useful to run ReFrame with the :option:`--keep-stage-files` and :option:`--dont-restage` options to prevent ReFrame from removing the test's stage directory upon successful completion of the test.
+   For this particular type of test, these options will avoid having to rebuild the required package dependencies every time the test is retried.
diff --git a/docs/tutorials.rst b/docs/tutorials.rst
@@ -9,6 +9,7 @@ ReFrame Tutorials
    tutorial_advanced
    tutorial_deps
    tutorial_tips_tricks
+   tutorial_build_automation
 
 
 Online Tutorials
diff --git a/reframe/core/buildsystems.py b/reframe/core/buildsystems.py
@@ -703,7 +703,7 @@ class EasyBuild(BuildSystem):
 
     ReFrame will use EasyBuild to build and install the code in the test's
     stage directory by default. ReFrame uses environment variables to
-    configure EasyBuild for running, so Users can pass additional options to
+    configure EasyBuild for running, so users can pass additional options to
     the ``eb`` command and modify the default behaviour.
 
     .. versionadded:: 3.5.0
@@ -832,7 +832,8 @@ class Spack(BuildSystem):
     #: :default: :class:`None`
     environment = fields.TypedField(typ.Str[r'\S+'], _UndefinedType)
 
-    #: The list of specs to build and install within the given environment.
+    #: A list of additional specs to build and install within the given
+    #: environment.
     #:
     #: ReFrame will add the specs to the active environment by emititing the
     #: following command:
diff --git a/reframe/frontend/cli.py b/reframe/frontend/cli.py
@@ -857,8 +857,6 @@ def _case_failed(t):
             printer.debug(dependencies.format_deps(testgraph))
             if options.restore_session is not None:
                 testgraph, restored_cases = report.restore_dangling(testgraph)
-                print(dependencies.format_deps(testgraph))
-                print(restored_cases)
 
         testcases = dependencies.toposort(
             testgraph,
diff --git a/tutorials/build_systems/easybuild/eb_test.py b/tutorials/build_systems/easybuild/eb_test.py
@@ -0,0 +1,30 @@
+# Copyright 2016-2021 Swiss National Supercomputing Centre (CSCS/ETH Zurich)
+# ReFrame Project Developers. See the top-level LICENSE file for details.
+#
+# SPDX-License-Identifier: BSD-3-Clause
+
+import reframe as rfm
+import reframe.utility.sanity as sn
+
+
+@rfm.simple_test
+class BZip2EBCheck(rfm.RegressionTest):
+    descr = 'Demo test using EasyBuild to build the test code'
+    valid_systems = ['*']
+    valid_prog_environs = ['builtin']
+    executable = 'bzip2'
+    executable_opts = ['--help']
+    build_system = 'EasyBuild'
+
+    @run_before('compile')
+    def setup_build_system(self):
+        self.build_system.easyconfigs = ['bzip2-1.0.6.eb']
+        self.build_system.options = ['-f']
+
+    @run_before('run')
+    def prepare_run(self):
+        self.modules = self.build_system.generated_modules
+
+    @sanity_function
+    def assert_version(self):
+        return sn.assert_found(r'Version 1.0.6', self.stderr)
diff --git a/tutorials/build_systems/spack/spack_test.py b/tutorials/build_systems/spack/spack_test.py
@@ -0,0 +1,25 @@
+# Copyright 2016-2021 Swiss National Supercomputing Centre (CSCS/ETH Zurich)
+# ReFrame Project Developers. See the top-level LICENSE file for details.
+#
+# SPDX-License-Identifier: BSD-3-Clause
+
+import reframe as rfm
+import reframe.utility.sanity as sn
+
+
+@rfm.simple_test
+class BZip2SpackCheck(rfm.RegressionTest):
+    descr = 'Demo test using Spack to build the test code'
+    valid_systems = ['*']
+    valid_prog_environs = ['builtin']
+    executable = 'bzip2'
+    executable_opts = ['--help']
+    build_system = 'Spack'
+
+    @run_before('compile')
+    def setup_build_system(self):
+        self.build_system.environment = 'myenv'
+
+    @sanity_function
+    def assert_version(self):
+        return sn.assert_found(r'Version 1.0.6', self.stderr)
diff --git a/tutorials/build_systems/spack/src/myenv/spack.yaml b/tutorials/build_systems/spack/src/myenv/spack.yaml
@@ -0,0 +1,9 @@
+spack:
+  specs:
+    - bzip2@1.0.6
+  concretization: together
+  config:
+    install_tree: spack/opt/spack
+    module_roots:
+      tcl: spack/share/spack/modules
+      lmod: spack/share/spack/lmod

Original file line number	Diff line number	Diff line change
`@@ -41,8 +41,8 @@ checked_exec()`
`41`	`41`
`42`	`42`	`run_tutorial_checks()`
`43`	`43`	`{`
`44`		`- cmd="./bin/reframe -C tutorials/config/settings.py -J account=jenscscs \`
`45`		`---save-log-files --flex-alloc-nodes=2 -r -x HelloThreadedExtendedTest $@"`
	`44`	`+ cmd="./bin/reframe -vv -C tutorials/config/settings.py -J account=jenscscs \`
	`45`	`+--save-log-files --flex-alloc-nodes=2 -r -x HelloThreadedExtendedTest\|BZip2.*Check $@"`
`46`	`46`	echo "[INFO] Running tutorial checks with \`$cmd'"
`47`	`47`	`checked_exec $cmd`
`48`	`48`	`}`