downloadRemapCatalog returning empty bed file?

[albertdyu]

Hello there,

Amazing resource you've created. I've found enormous joy browsing it in a low throughput fashion, but I'm having some trouble getting it to function in R. When I run the code:

remap.dir <- "~/ReMapEnrich"
dir.create(remap.dir, showWarnings = FALSE, recursive = TRUE)
remapCatalog2022dm6 <- downloadRemapCatalog(remap.dir, version = "2022", assembly = "dm6", force = TRUE)

remapCatalog <- bedToGranges(remapCatalog2022dm6)

It returns a bed file:

"A file has been created at ~/ReMapEnrich/remap2022_nr_macs2_dm6_v1_0.bed"

But the bed file is empty. The same happens when I run the default command - I get an empty bed file calledremap2018_nr_macs2_hg38_v1_2.bed

Any idea what I'm doing wrong?

[CatherineBaugher]

I think issue #18 is related to your issue, and I just realized I probably should have written my comment here instead, since yours is older. If you're still interested in using this package and haven't figured it out yet, maybe pull request #16 will help you? I just copy and paste the code after importing the library and it seems to work.