Skip to content

Commit 0e8a598

Browse files
petebuntingpetebunting
committed
Added tutorial using the species distribution modelling modules (will be released in v5.1.8)
1 parent 6e0796f commit 0e8a598

File tree

9 files changed

+9126
-0
lines changed

9 files changed

+9126
-0
lines changed

‎13_species_distribution_modelling/01_Prepare_Datasets.ipynb‎

Lines changed: 2971 additions & 0 deletions
Large diffs are not rendered by default.

‎13_species_distribution_modelling/02_Run_Species_Distribution_Modelling.ipynb‎

Lines changed: 6023 additions & 0 deletions
Large diffs are not rendered by default.

‎data/sdm/NRW_report_193-Status_Snowdon_Beetle_2016.pdf‎

3.04 MB
Binary file not shown.

‎data/sdm/Phase1-Habitat-DominantSpecies-codes-2008.xlsx‎

30.3 KB
Binary file not shown.

‎data/sdm/environmental_data/Elevation.tif‎

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,3 @@
1+
version https://git-lfs.github.com/spec/v1
2+
oid sha256:c2c5765ecc34b5884942d2e1c68d111ca42b31803538f017feb8aee1efbf639a
3+
size 2399670

‎data/sdm/environmental_data/Mean_Winter_Temp.tif‎

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,3 @@
1+
version https://git-lfs.github.com/spec/v1
2+
oid sha256:d75665e017cd008298b93e580c56de48c0c6f14b622bd8b120b137b8a0a300d8
3+
size 2399680

‎data/sdm/environmental_data/Phase1_Veg.geojson‎

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,3 @@
1+
version https://git-lfs.github.com/spec/v1
2+
oid sha256:6d8aaa5d5e75dddba4f6307e7c2c1685f254ef47f786502d98a69d1453be7943
3+
size 8278049

‎data/sdm/environmental_data/Study_Area.geojson‎

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,3 @@
1+
version https://git-lfs.github.com/spec/v1
2+
oid sha256:a3e66318b31e7218bd4ad57971aea17f2d83ac5e3f8423c1a5584f7a6f3f308f
3+
size 423

‎data/sdm/sightings/Chrysolina_cerealis.csv‎

Lines changed: 120 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,120 @@
1+
Scientific name,Common name,Occurrence status,Year,Latitude (WGS84),Longitude (WGS84),Coordinate uncertainty (m),Recorder,Individual count,Institution code
2+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1978,53.06999,-4.0537,1000,John Parry,13,NRW
3+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1902,53.06999,-4.0537,1000,J. Chappell,13,NRW
4+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1989,53.08743,-4.08439,1000,Unknown,1,NRW
5+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08164,-4.08464,1,Michael Shackshaft,1,NRW
6+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1989,53.08158,-4.08486,100,Adrian Fowles,1,NRW
7+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1886,53.07409,-4.07628,2000,Ellis T W,,NBGRC
8+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1965,53.07512,-4.01662,10000,C Johnson,,Cofnod
9+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1851,53.06999,-4.0537,1000,James Foxcroft,1,NRW
10+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08184,-4.08394,1,Michael Shackshaft,1,NRW
11+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08087,-4.08541,1,Michael Shackshaft,1,NRW
12+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08274,-4.08246,1,Michael Shackshaft,1,NRW
13+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07845,-4.08396,1000,David Evans,2,NRW
14+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08209,-4.08327,1,Michael Shackshaft,1,NRW
15+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08219,-4.0835,1,Michael Shackshaft,1,NRW
16+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1945,53.07897,-4.05412,1000,John Hobart,2,NRW
17+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08093,-4.08544,1,Michael Shackshaft,1,NRW
18+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07845,-4.08396,1000,David Evans,4,NRW
19+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07845,-4.08396,1000,Unknown,1,NRW
20+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1886,53.06999,-4.0537,1000,Unknown,,NRW
21+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1994,53.06356,-4.08697,100,Mark Jones,1,NRW
22+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08168,-4.08252,1,Michael Shackshaft,1,NRW
23+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08094,-4.08541,1,Michael Shackshaft,1,NRW
24+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1989,53.08743,-4.08439,1000,Unknown,1,NRW
25+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08274,-4.08245,1,Michael Shackshaft,1,NRW
26+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1976,53.08341,-4.08345,100,Peter Hodge,1,NRW
27+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08215,-4.08348,1,Michael Shackshaft,1,NRW
28+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08084,-4.08546,1,Michael Shackshaft,1,NRW
29+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.08207,-4.08327,1,Michael Shackshaft,1,NRW
30+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1989,53.08743,-4.08439,1000,Unknown,1,NRW
31+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.08158,-4.08486,100,Adrian Fowles,2,NRW
32+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.08743,-4.08439,1000,Unknown,1,NRW
33+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07845,-4.08396,1000,David Evans,4,NRW
34+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.07281,-4.07079,1,Brian Laney,1,NRW
35+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2011,53.07512,-4.01662,10000,Graham A.N. & J.E.,,Cofnod
36+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1999,53.07897,-4.05412,1000,Hywel Roberts,2,NRW
37+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1980,53.08158,-4.08486,100,Philip King,4,NRW
38+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1973,53.07512,-4.01662,10000,K.C. Side,,NRW
39+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1970,53.11511,-4.01774,100,Joan Morgan,2,NRW
40+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2010,53.07512,-4.01662,10000,Graham A.N. & J.E.,,Cofnod
41+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1905,53.06999,-4.0537,1000,Unknown,1,NRW
42+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1886,53.06999,-4.0537,1000,John Ellis,,NRW
43+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1886,53.06999,-4.0537,1000,Unknown,17,NRW
44+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07845,-4.08396,1000,Unknown,1,NRW
45+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1985,53.0811,-4.06094,100,Nigel Brown,2,NRW
46+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1965,53.08597,-4.09104,100,Colin Johnson,,NRW
47+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1957,53.06999,-4.0537,1000,Unknown,2,NRW
48+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2007,53.07294,-4.07236,1,Brian Laney,2,NRW
49+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1875,53.07409,-4.07628,2000,,,NBGRC
50+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2011,53.06261,-4.08991,100,Andrew Graham,1,NRW
51+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2010,53.06436,-4.09298,100,Andrew Graham,2,NRW
52+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1874,53.06999,-4.0537,1000,G.C. Champion,,NRW
53+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1906,53.06999,-4.0537,1000,H. Donisthorpe,24,NRW
54+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1980,53.08158,-4.08486,100,Philip King,2,NRW
55+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2016,53.08082,-4.0813,1,Tony Hunter;Mike Howe;Steve Judd;Richard Gallon,7,NRW
56+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2016,53.08142,-4.07885,1,Tony Hunter,3,NRW
57+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1992,53.06999,-4.0537,1000,Alan Buse,2,NRW
58+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.08743,-4.08439,1000,Unknown,1,NRW
59+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.08743,-4.08439,1000,Unknown,1,NRW
60+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1960,53.07897,-4.05412,1000,P.W. Price,1,NRW
61+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1989,53.08743,-4.08439,1000,Peter Hope Jones,3,NRW
62+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1997,53.08166,-4.08038,100,Gareth Higgins,1,NRW
63+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1856,53.06999,-4.0537,1000,James Foxcroft,,NRW
64+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1831,53.06999,-4.0537,1000,Unknown,,NRW
65+
Chrysolina cerealis,Rainbow Leaf Beetle,present,,53.07512,-4.01662,10000,W.W. Fowler,,Cumbria Biodiversity Data Centre
66+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1926,53.06999,-4.0537,1000,Unknown,,NRW
67+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1968,53.07512,-4.01662,10000,Rawdon Goodier,,NRW
68+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1829,53.06999,-4.0537,1000,Unknown,1,NRW
69+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1906,53.06999,-4.0537,1000,Unknown,1,NRW
70+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1997,53.07512,-4.01662,10000,Caroline Wilson,,Cofnod
71+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2018,53.07512,-4.01662,10000,Dutton,,Cofnod
72+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1979,53.06999,-4.0537,1000,John Parry,,NRW
73+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1886,53.06999,-4.0537,1000,John Ellis,2,NRW
74+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1966,53.06999,-4.0537,1000,E. Ansorge,,NRW
75+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1867,53.06999,-4.0537,1000,J.A. Brewer,,NRW
76+
Chrysolina cerealis,Rainbow Leaf Beetle,present,,53.07409,-4.07628,2000,,,NBGRC
77+
Chrysolina cerealis,Rainbow Leaf Beetle,present,,53.07512,-4.01662,10000,E.C. Bedwell,,Cumbria Biodiversity Data Centre
78+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07617,-4.08609,100,Unknown,2,NRW
79+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1885,53.06999,-4.0537,1000,R. Wilding,2,NRW
80+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1901,53.07512,-4.01662,10000,Unknown,12,NRW
81+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1968,53.06999,-4.0537,1000,G.A. Mitchell,,NRW
82+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.08743,-4.08439,1000,Unknown,1,NRW
83+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1980,53.10515,-4.02176,100,Philip King,2,NRW
84+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1906,53.06999,-4.0537,1000,Unknown,2,NRW
85+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1969,53.06999,-4.0537,1000,Unknown,3,NRW
86+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1955,53.07512,-4.01662,10000,Unknown,4,NRW
87+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1961,53.06999,-4.0537,1000,A.M. Massee,1,NRW
88+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07845,-4.08396,1000,Unknown,2,NRW
89+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1995,53.07973,-4.08775,100,Mike Howe,7,NRW
90+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1951,53.06999,-4.0537,1000,A.M. Massee,1,NRW
91+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1906,53.06999,-4.0537,1000,E.C. Bedwell;J. Kidson-Taylor,,NRW
92+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1995,53.08338,-4.08494,100,Adrian Fowles,8,NRW
93+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1906,53.07512,-4.01662,10000,J.K. Taylor,,Cumbria Biodiversity Data Centre
94+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1943,53.07512,-4.01662,10000,Unknown,1,NRW
95+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1963,53.06947,-4.08353,1000,A.M. Massee;A.E. Gardner,,NRW
96+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1943,53.07512,-4.01662,10000,Unknown,5,NRW
97+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1980,53.08012,-4.06538,100,Philip King,1,NRW
98+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1967,53.06999,-4.0537,1000,Unknown,5,NRW
99+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2016,53.08866,-4.08102,1,Tony Hunter,1,NRW
100+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1998,53.08743,-4.08439,1000,Russell Gomm,1,NRW
101+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1995,53.08338,-4.08494,100,Adrian Fowles,2,NRW
102+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1885,53.06999,-4.0537,1000,Unknown,2,NRW
103+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1907,53.06999,-4.0537,1000,John Read Tomlin,1,NRW
104+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1943,53.07512,-4.01662,10000,Unknown,1,NRW
105+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07845,-4.08396,1000,Unknown,1,NRW
106+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1989,53.07973,-4.08775,100,Liz Howe;Mike Howe,1,NRW
107+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2015,53.08142,-4.07885,1,Tony Hunter,2,NRW
108+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2011,53.0689,-4.07208,10,Alastair Hotchkiss,1,NRW
109+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2015,53.08082,-4.0813,1,Tony Hunter,1,NRW
110+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1910,53.06999,-4.0537,1000,Unknown,4,NRW
111+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1905,53.06999,-4.0537,1000,J. Kidson-Taylor,,NRW
112+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1980,53.08158,-4.08486,100,Philip King,1,NRW
113+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1980,53.08158,-4.08486,100,Philip King,1,NRW
114+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1901,53.07512,-4.01662,10000,Unknown,4,NRW
115+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.08743,-4.08439,1000,Unknown,1,NRW
116+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07617,-4.08609,100,Unknown,1,NRW
117+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1990,53.07617,-4.08609,100,Unknown,1,NRW
118+
Chrysolina cerealis,Rainbow Leaf Beetle,present,2015,53.08036,-4.08001,1,Tony Hunter,1,NRW
119+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1992,53.06999,-4.0537,1000,Alan Buse,1,NRW
120+
Chrysolina cerealis,Rainbow Leaf Beetle,present,1989,53.08743,-4.08439,1000,Unknown,1,NRW

0 commit comments

Comments
 (0)