biotools-pullrequest-analyzer.yml

name: analyze how many biotools have change on pullrequest

on:
  workflow_dispatch:

jobs:
  analyze:
    name: Analyze biotools differences 
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
      with:
        path: content
    - uses: actions/checkout@v4
      with:
        repository: bio-tools/content-ecosystem-utils
        path: content-ecosystem-utils
    - name: analyze biotools difference
      env:
        GITHUB_USER: ${{ secrets.GITHUB_USER }}
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      run: |
        sudo apt install python3-pip
        sudo apt install python3-setuptools git
        pip3 install gitpython
        cd ${{ github.workspace }}/content
        git remote add biotools-content${{ github.run_id }} https://github.com/bio-tools/content.git
        git fetch biotools-content${{ github.run_id }}
        git fetch origin pull/${{ github.event.number }}/head:${{ github.run_id }}
        git checkout ${{ github.run_id }}
        python3 ${{ github.workspace }}/content-ecosystem-utils/scripts/biotools-pullrequest-bot/biotools_pullrequest_analyzer.py ${{ github.workspace }}/content biotools-content${{ github.run_id }}/master ${{ github.run_id }} > output.txt
        cat output.txt
    - name: Upload output
      uses: actions/upload-artifact@v4
      with:
          name: output
          path: output.txt
  comment:
    needs: analyze
    name: Add PR comments
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Download output
        uses: actions/download-artifact@v4
        with:
          name: output
      - name: copy output to workflow dir
        run: |
         cat ${{ github.workspace }}/content-ecosystem-utils/content/output/output.txt
         mkdir -p .github/workflows/
         cp ${{ github.workspace }}/content-ecosystem-utils/content/output/output.txt .github/workflows/output.txt 
      - name: comment under pr  
        uses: harupy/comment-on-pr@master
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        with:
          filename: output.txt