Commit d541265
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1,294 files changed
+7758
-3562
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- abyss
- affxparser
- affyio
- affy
- alter
- annotationdbi
- annotationhub
- aroma.light
- arrayexpress
- artemis
- ascat
- atac
- atropos
- autodock_vina
- avogadro
- bali-phy
- bamtools
- barrnap
- bbmap
- bcbio-nextgen
- bcftools
- beaconlab_pscan
- beagle
- beast
- bedops
- bedtools
- bifrost
- bio-tradis
- biobambam
- biobase
- biocgenerics
- biomart
- biomformat
- bioperl
- biostrings
- biosyntax
- bitseq
- blasr
- blast
- blat
- bowtie2
- bowtie
- boxshade
- busco
- bwa
- cd-hit
- centrifuge
- cgview
- chromhmm
- circos
- clonalorigin
- clustal2
- clustalo
- cner
- complexheatmap
- crac
- cufflinks
- cummerbund
- cutesv
- dada2
- deseq2
- dialign
- diamond
- discosnp
- dnacopy
- dssp
- ea-utils
- ebseq
- echo
- edger
- emboss
- emmax
- ensembldb
- exonerate
- fastqc
- fasttree
- figtree
- flash
- flye
- freebayes
- garlic
- gbrowse
- genabel
- genefilter
- geneplotter
- genomeinfodb
- genometester
- genometools
- genomicalignments
- genomicfiles
- genomicranges
- gentle
- geoquery
- gff2aplot
- gff2ps
- gffread
- ghemical
- glimmer
- gmap
- gprofile_r
- grohmm
- gromacs
- gseabase
- gsva
- gviz
- hilbertvis
- hisat2
- hmmer2
- hmmer3
- igv
- illustrate
- impute
- iq-tree
- iranges
- isoformswitchanalyzer
- jalview
- java_treeview
- jellyfish
- kalign
- khmer
- kmc
- kraken
- krona
- lagan
- last
- limma
- macs
- mafft
- maqview
- maq
- mcl
- megadepth
- megahit
- melting
- mergeomics
- metagenomeseq
- metaphlan
- metastudent
- minia
- minimac3
- mirtop
- mmseqs
- mosdepth
- mothur
- mrbayes
- mrtrix3
- multiassayexperiment
- multiqc
- mummer
- muscle
- mustang
- nanook
- nanopolish
- nanostringqcpro
- neobio
- ngmlr
- njplot
- norsnet
- norsp
- ntcard
- nxtrim
- obitools
- oligoclasses
- oligo
- optimir
- pal2nal
- paleomix
- paml
- patman
- pcamethods
- pftools
- pheatmap
- phylip
- phyloseq
- phyml
- picard_tools
- picopore
- plink
- plip
- prank
- predictnls
- primer3
- probcons
- proda
- profisis
- prottest
- pscanchip
- purecn
- pymol
- pyronoise
- q2-feature-classifier
- q2-sample-classifier
- qiime
- qtltools
- rambo-k
- rapmap
- raptor
- rasmol
- raster3d
- raxml
- rcpi
- readseq
- rnahybrid
- robustrankaggregation
- rqtl
- rsamtools
- rsem
- rsubread
- rtracklayer
- salmon
- sambamba
- samtools
- sam
- savr
- scater
- sctransform
- seaview
- segemehl
- seqkit
- seqtk
- sga
- shortread
- sibelia
- sibsim4
- sigma_align
- sim4
- smalt
- snakemake
- snap
- sniffles
- snpeff
- soap2
- soapsnp
- spades
- ssake
- staden
- star
- stringtie
- subread
- tcoffee
- tcr
- tfbstools
- tiddit
- titancna
- tree-puzzle
- treeview
- trim_galore
- trimmomatic
- tximport
- ugene
- variantannotation
- vcfanno
- vcftools
- velvet
- vienna_rna_package
- vmatch
- vsearch
- vt
- wgcna
- wise
- xvector
- imports/debian-med
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