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lines changed Original file line number Diff line number Diff line change @@ -57,11 +57,15 @@ I would say there are two major advantages:
5757
58581 . It does not require any commercial solvers, in fact it works fastest with
5959 the free glpk solver that already comes together with cobrapy. For instance
60- for the small central metabolism model included in data/ the reconstruction
61- uses the following times:
62- - cglpk: 0.04 s
63- - cplex: 0.53 s
64- - gurobi: 0.21 s
60+ for the small central metabolism model (101 irreversible reactions) included
61+ together with CORDA the reconstruction uses the following times:
62+
63+ - cglpk: 0.02 s
64+ - cplex: 0.30 s
65+ - gurobi: 0.12 s
66+ - mosek: 0.23 s
67+
68+
65692 . It's fast. CORDA for Python uses a strategy similar to FastFVA, where a previous
6670 solution basis is recycled repeatedly (speed-up of ~ 4-10 times). A normal
6771 reconstruction for Recon 1 with mCADRE can take several hours. With the original
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