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lines changed Original file line number Diff line number Diff line change 1313import sys
1414from os import devnull
1515
16- TOL = 1e-5 # Tolerance to judge whether a flux is non-zero
17- UPPER = 1e16 # default upper bound
16+ TOL = 1e-6 # Tolerance to judge whether a flux is non-zero
17+ UPPER = 1e16 # default upper bound
1818
1919class CORDA (object ):
2020
@@ -205,7 +205,7 @@ def __str__(self):
205205 free_inc = np .sum ((old == 0 ) & (new == 3 ))
206206 high_inc = np .sum ((old == 3 ) & (new == 3 ))
207207 out = "build status: reconstruction complete\n " + \
208- "Inc. reactions: {}/{}\n " .format (np .sum (new == 3 ), len (old )) + \
208+ "Inc. reactions: {}/{}\n " .format (np .sum (new == 3 ), len (old )) + \
209209 " - unclear: {}/{}\n " .format (free_inc , old_counts [0 ]) + \
210210 " - exclude: {}/{}\n " .format (noc_inc , old_counts [- 1 ]) + \
211211 " - low and medium: {}/{}\n " .format (med_inc , old_counts [1 ] + \
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