Add option to disable compilation when configuring a simulation

[wtbarnes]

When configuring a simulation, the InitialConditions.exe (if it is run) and HYDRAD.exe are compiled. This may not always be optimal, particularly if you are setting up simulations that are to be run elsewhere. There should be a kwarg to Configure.setup_simulation that disables the compilation of HYDRAD.exe. The compilation of the initial conditions will already be disabled if you set run_initial_conditions to False.