fix: update all URLs from charmer to charmer-rs

- Update GitHub repo URLs in README, mkdocs, and docs
- Update GitHub Pages site URL
- Fix git clone commands and release download URLs

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Author: jayhesselberth

README.md

@@ -13,7 +13,7 @@ A terminal user interface (TUI) for monitoring Snakemake pipelines on HPC cluste
 ## Installation
 
 ```bash
-cargo install --git https://github.com/rnabioco/charmer.git
+cargo install --git https://github.com/rnabioco/charmer-rs.git
 ```
 
 ## Quick Start
@@ -28,7 +28,7 @@ charmer /path/to/pipeline
 
 ## Documentation
 
-Full documentation is available at **[rnabioco.github.io/charmer](https://rnabioco.github.io/charmer)**.
+Full documentation is available at **[rnabioco.github.io/charmer-rs](https://rnabioco.github.io/charmer-rs)**.
 
 ## License
 

docs/dev/contributing.md

@@ -12,8 +12,8 @@ Thank you for your interest in contributing to charmer!
 ### Clone and Build
 
 ```bash
-git clone https://github.com/rnabioco/charmer.git
-cd charmer
+git clone https://github.com/rnabioco/charmer-rs.git
+cd charmer-rs
 
 # Using cargo
 cargo build

docs/getting-started/installation.md

@@ -12,8 +12,8 @@
 
 ```bash
 # Clone the repository
-git clone https://github.com/rnabioco/charmer.git
-cd charmer
+git clone https://github.com/rnabioco/charmer-rs.git
+cd charmer-rs
 
 # Build release binary
 cargo build --release
@@ -34,8 +34,8 @@ cargo install --path crates/charmer
 curl -fsSL https://pixi.sh/install.sh | bash
 
 # Clone and install
-git clone https://github.com/rnabioco/charmer.git
-cd charmer
+git clone https://github.com/rnabioco/charmer-rs.git
+cd charmer-rs
 pixi install
 
 # Build
@@ -54,11 +54,11 @@ Pre-built binaries are available for each release:
 - `charmer-macos-x86_64.tar.gz` - macOS Intel
 - `charmer-macos-aarch64.tar.gz` - macOS Apple Silicon
 
-Download from the [releases page](https://github.com/rnabioco/charmer/releases).
+Download from the [releases page](https://github.com/rnabioco/charmer-rs/releases).
 
 ```bash
 # Example for Linux
-curl -LO https://github.com/rnabioco/charmer/releases/latest/download/charmer-linux-x86_64.tar.gz
+curl -LO https://github.com/rnabioco/charmer-rs/releases/latest/download/charmer-linux-x86_64.tar.gz
 tar xzf charmer-linux-x86_64.tar.gz
 ./charmer --help
 ```

mkdocs.yml

@@ -1,8 +1,8 @@
 site_name: charmer
 site_description: TUI for monitoring Snakemake pipelines on HPC clusters
-site_url: https://rnabioco.github.io/charmer
-repo_url: https://github.com/rnabioco/charmer
-repo_name: rnabioco/charmer
+site_url: https://rnabioco.github.io/charmer-rs
+repo_url: https://github.com/rnabioco/charmer-rs
+repo_name: rnabioco/charmer-rs
 
 theme:
   name: material
@@ -65,4 +65,4 @@ nav:
 extra:
   social:
     - icon: fontawesome/brands/github
-      link: https://github.com/rnabioco/charmer
+      link: https://github.com/rnabioco/charmer-rs