clover/DESCRIPTION at devel · rnabioco/clover · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
Package: clover
Title: Plotting and analysis for nanopore tRNA sequencing data
Version: 0.0.0.9000
Authors@R: c(
    person("Jay", "Hesselberth", , "jay.hesselberth@cuanschutz.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6299-179X")),
    person("Jill", "Bilodeaux", , "jill.bilodeuax@cuanschutz.edu", role = "aut",
           comment = c(ORCID = "0000-0002-1326-7092")),
    person("Laura", "White", , "laura.k.white@cuanschutz.edu", role = "aut",
           comment = c(ORCID = "0000-0003-2909-6627")),
    person("RNA Bioscience Initiative", role = c("fnd", "cph"),
           comment = c(ROR = "https://ror.org/03wmf1y16"))
  )
Description: Analyze direct tRNA sequencing data. Provides differential
    expression, modification, and tools for visualization.
License: MIT + file LICENSE
URL: https://rnabioco.github.io/clover, https://github.com/rnabioco/clover
BugReports: https://github.com/rnabioco/clover/issues
Depends:
    R (>= 4.5.0)
Imports:
    Biostrings,
    cli,
    cowplot,
    dplyr,
    forcats,
    ggplot2,
    methods,
    purrr,
    readr,
    rlang,
    S4Vectors,
    scales,
    stringr,
    SummarizedExperiment,
    tibble,
    tidyr,
    xml2,
    yaml
Suggests:
    circlize,
    DESeq2,
    ggraph,
    ggrepel,
    ggtext,
    gt,
    htmltools,
    httr2,
    igraph,
    jsonlite,
    knitr,
    patchwork,
    pwalign,
    rmarkdown,
    rsvg,
    testthat (>= 3.0.0),
    tidygraph,
    withr
LinkingTo:
    cpp11
VignetteBuilder:
    knitr
biocViews: RNASeq, Visualization
Config/Needs/dev: devtools, roxygen2, pkgdown
Config/Needs/website: rnabioco/rbitemplate
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3