Commit 4848f1f
Add Sprinzl coordinates for phage T4 and T5 tRNAs
Add data-raw/sprinzl.R, a CM-based Sprinzl position assigner that
aligns tRNA sequences against the tRNAscan-SE bacterial covariance
model and assigns canonical Sprinzl positions based on the CM
consensus structure. Handles D-loop insertions (17a, 20a, 20b),
variable arm e-positions for type II tRNAs, and the standard
cloverleaf numbering system.
Generated coords for 8 T4 phage tRNAs (from test data FASTA) and
5 T5 phage tRNAs (sequences extracted from MODOMICS).
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>1 parent edacaff commit 4848f1f
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