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Update Snakemake workflow to include conda info
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.github/workflows/snakemake_run.yml

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -19,8 +19,10 @@ jobs:
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channel-priority: true
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activate-environment: scraps_conda
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environment-file: scraps_conda.yml
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auto-activate-base: false
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- shell: bash -el {0}
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- name: Run Snakemake
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shell: bash -el {0}
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run: |
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snakemake -npr --configfile config.yaml
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conda info
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snakemake -npr --configfile config.yaml

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