Activate conda environment for Snakemake run (not during env creation)

Activate the 'scraps_conda' environment before running Snakemake.

Author: agillen

.github/workflows/snakemake_run.yml

@@ -17,13 +17,12 @@ jobs:
         mamba-version: "*"
         channels: bioconda,conda-forge,defaults
         channel-priority: true
-        activate-environment: scraps_conda
         environment-file: scraps_conda.yml
         auto-activate-base: false
         use-mamba: true
 
     - name: Run Snakemake
       shell: bash -el {0}
       run: |
-        conda info
+        conda activate scraps_conda
         snakemake -npr --configfile config.yaml