.pre-commit-config.yaml

# This is the configuration for pre-commit, a local framework for managing pre-commit hooks
#   Check out the docs at: https://pre-commit.com/

exclude: ^(.*/env/.*|envs/.*|read5/_version.py) # Exclude conda environments and version file

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.6.0
    hooks:
      - id: end-of-file-fixer
      - id: trailing-whitespace
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.4.3
    hooks:
      # lint & attempt to correct failures (e.g. pyupgrade)
      - id: ruff
        args: [--fix]
      # compatible replacement for black
      - id: ruff-format
  - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
    rev: v2.13.0
    hooks:
      - id: pretty-format-toml
        args: [--autofix]
  - repo: https://github.com/codespell-project/codespell
    rev: v2.2.6
    hooks:
      - id: codespell
        args: [--write]