preproc.yaml

reference: Ref12_reference.tif
pxmask: Ref12_pxmask.tif
correct_saturation: true
remove_background: true
dead_time: 0.0019
dead_time_gap_factor: 5
shutter_time: 8
mask_gaps: false
interpolate_dead: true
float: true
find_peaks: true
compression: 32004
cam_length: 1.58
y_scale: 1
ellipse_ratio: 1.023
ellipse_angle: 83
pixel_size: 5.5e-05
wavelength: 0.0251
com_threshold: 0.7
com_xrng: 516
com_yrng: 516
lorentz_radius: 30
lorentz_maxshift: 26
xsize: 1556
ysize: 516
r_adf1:
- 50
- 100
r_adf2:
- 100
- 200
select_query: frame >= 0 and crystal_id >= 0 and frame <= 4
agg_query: frame >= 1 and frame <= 4
agg_file_suffix: _agg.h5
aggregate: true
scratch_dir: /scratch/diffractem
proc_dir: proc_data
peak_data_path: /%/data
det_shift_x_path: det_shift_x_mm
det_shift_y_path: det_shift_y_mm
rechunk: null
peak_search_params:
  min-res: 0
  max-res: 550
  local-bg-radius: 5
  threshold: 8
  min-pix-count: 3
  max-pix-count: 10000
  min-snr: 3.5
indexing_params:
  indexing: pinkIndexer
  integration: rings-nograd-nocen
  int-radius: 3,4,6
  peaks: cxi
  max-indexer-threads: 2
  min-peaks: 15
  no-refine: true
  no-retry: true
  no-check-peaks: true
  camera-length-estimate: 1.58
  pinkIndexer-considered-peaks-count: 4
  pinkIndexer-angle-resolution: 4
  pinkIndexer-refinement-type: 5
  pinkIndexer-tolerance: 0.1
  pinkIndexer-reflection-radius: 0.001
  pinkIndexer-max-resolution-for-indexing: 2
  pinkIndexer-no-check-indexed: false
integration_params:
  indexing: file
  integration: rings-nograd-nocen
  int-radius: 3,4,6
  peaks: cxi
  max-indexer-threads: 2
  no-refine: true
  no-retry: true
  no-check-peaks: true
  overpredict: false
max_peaks: 500
im_exc: indexamajig
friedel_refine: true
min_peaks: 15
peak_sigma: 2
friedel_max_radius: null