Fixing capitalization in example file calls

Author: kmartinet

R/create_SpAR.R

@@ -41,7 +41,7 @@
 #'
 #' # Read tree from Patton et al. (2021), trimmed to Caribbean species
 #' tree <- ape::read.tree(system.file("extdata",
-#'                                    "Patton_Anolis_trimmed.tree",
+#'                                    "Patton_Anolis_Trimmed.tree",
 #'                                    package = "ssarp"))
 #'
 #' occ_speciation <- estimate_ms(tree = tree,

R/estimate_BAMM.R

@@ -37,7 +37,7 @@
 #'
 #' # Read tree from Patton et al. (2021), trimmed to Caribbean species
 #' tree <- ape::read.tree(system.file("extdata",
-#'                              "Patton_Anolis_trimmed.tree",
+#'                              "Patton_Anolis_Trimmed.tree",
 #'                              package = "ssarp"))
 #'
 #' # Event data file from an external BAMM run

R/estimate_DR.R

@@ -56,7 +56,7 @@
 #'
 #' # Read tree from Patton et al. (2021), trimmed to Caribbean species
 #' tree <- ape::read.tree(system.file("extdata",
-#'                                    "Patton_Anolis_trimmed.tree",
+#'                                    "Patton_Anolis_Trimmed.tree",
 #'                                    package = "ssarp"))
 #'
 #' occ_speciation <- estimate_dr(tree = tree,

R/estimate_MS.R

@@ -33,7 +33,7 @@
 #'
 #' # Read tree from Patton et al. (2021), trimmed to Caribbean species
 #' tree <- ape::read.tree(system.file("extdata",
-#'                                    "Patton_Anolis_trimmed.tree",
+#'                                    "Patton_Anolis_Trimmed.tree",
 #'                                    package = "ssarp"))
 #'
 #' occ_speciation <- estimate_ms(tree = tree,