rotary/pyproject.toml at main · rotary-genomics/rotary · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
[project]
name = "Rotary"
version = "0.3.0-beta1"
description = """Rotary is a bioinformatics toolkit and scalable hybrid assembly workflow for generating refined
assemblies of circular prokaryotic genomes. It contains modules addressing common issues with circular assemblies.
The snakemake-based pipeline integrates these modules and implements best practices for hybrid short/long-read microbial
genome assembly."""
authors = [
    {name = "Jackson M. Tsuji"},
    {name = "Lee H. Bergstrand"}
]

license = {file = "LICENSE"}
readme = "README.md"

dependencies = [
    "pandas ~=1.4",
    "snakemake ~=7.32",
    "ruamel.yaml ~=0.17",
    "psutil ~=5.9",
    "sh ~=2.0",
    "biopython ~=1.81"
]

[tool.setuptools.packages]
find = {}

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project.scripts]
rotary = "rotary.rotary:main"
rotary-repair = "rotary.repair:main"

[tool.setuptools]
include-package-data = true