ggenealogy

Make on-the-fly visualizations of genealogical data

Summary:

Re-factor the phyViz package into a new package called ggenealogy, which provides additional methods to visualize the ancestors and descendants of a given line or variety.

Description: :

• Draw interactive genealogy trees from database of known lineage.
• Select generation number of ancestors and descendants to show around a given variety.
• Show shortest path between two given varieties, and superimpose over full lineage structure.
• Organize nodes horizontally by time of emergence, and vertically by a given additional variable.
• Obtain graph theory measures of the full lineage structure.
• Produce color matrix plots of variables between a subset of varieties.
• Ensure plotting tools can be used for both exploratory data analysis and publication purposes.

> library(devtools)
> install_github("phyViz", "dicook")

Related work:

Potential tasks:

• Incorporate Shiny to allow users to examine genealogy visualization tools in a more interactive way
• Test the package on multiple toy datasets
  • Soybean parent-child relationships
  • Barley parent-child relationships
  • Mathematics Genealogy Project (http://genealogy.math.ndsu.nodak.edu/)
• Enhance the flexibility of potential data input types
  • Currently-required input format is a data frame of parent-child relationships
  • Possible input types include Purdy Notation System

Skills required:

Knowledge of genealogical data structures, igraph, ggplot2, shiny, devtools

Test:

Fork the package on GH and create a pull-request implementing a method for tables::tabular. Quick and dirty solution:

> 

Mentor: Di Cook ([@](mailto:visnut {at} gmail {dot} com)) and Susan Vanderplas ([@](mailto:srvanderplas {at} gmail {dot} com)) as backup mentor

Disclaimer: