Pandoc 3.8.2.1 adds a counter into table (#596)

cderv · web-flow · commit a2a0853637a0 · 2025-12-11T11:15:28.000+01:00
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -32,12 +32,13 @@ jobs:
       matrix:
         config:
           # testing R release with last shipped pandoc version in RStudio IDE and new pandoc
-          - {os: windows-latest, pandoc: '3.5',    r: 'release'}
-          - {os: macOS-latest,   pandoc: '3.5',    r: 'release'}
+          - {os: windows-latest, pandoc: '3.6.3',    r: 'release'}
+          - {os: macOS-latest,   pandoc: '3.6.3',    r: 'release'}
           - {os: ubuntu-latest,  pandoc: 'devel',    r: 'release'}
           # testing older pandoc versions
-          - {os: ubuntu-latest,  pandoc: '3.2.1',   r: 'release'} # special \pandocbounded change
-          - {os: ubuntu-latest,  pandoc: '3.1.7',   r: 'release'} # special citeproc change
+          - {os: ubuntu-latest,  pandoc: '3.8.2.1',  r: 'release'} # special counter table addition
+          - {os: ubuntu-latest,  pandoc: '3.2.1',    r: 'release'} # special \pandocbounded change
+          - {os: ubuntu-latest,  pandoc: '3.1.7',    r: 'release'} # special citeproc change
           - {os: ubuntu-latest,  pandoc: '2.19.2',   r: 'release'}
           - {os: ubuntu-latest,  pandoc: '2.18',     r: 'release'}
           - {os: ubuntu-latest,  pandoc: '2.17.1.1', r: 'release'}
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: rticles
 Title: Article Formats for R Markdown
-Version: 0.27.11
+Version: 0.27.12
 Authors@R: c(
     person("JJ", "Allaire", , "jj@posit.co", role = "aut"),
     person("Yihui", "Xie", , "xie@yihui.name", role = "aut",
diff --git a/NEWS.md b/NEWS.md
@@ -36,6 +36,8 @@ supported by the `copernicus.cls`, and fix an issue where the section headers we
 
 ## MINOR CHANGES
 
+- Adapt all templates to new Pandoc 3.8.2.1 change regarding table counter definition (#595).
+
 - Patch `WileyNDJ` template used in `sim_article()` to fix an issue with `etex` package not being useful anymore in recent LaTeX distributions (#593).
 
 - Update all templates to work with Pandoc 3.2.1 by adding the definition of new `\pandocbounded` command used by Pandoc's LaTeX writers (see more at https://github.com/jgm/pandoc/releases/tag/3.2.1 and https://github.com/jgm/pandoc/issues/9660) (#571, #576).
diff --git a/R/utils.R b/R/utils.R
@@ -229,7 +229,8 @@ pdf_document_format <- function(format,
     pandoc3 = rmarkdown::pandoc_available("3"),
     pandoc317 = rmarkdown::pandoc_available("3.1.7"), # new citeproc command
     pandoc318 = rmarkdown::pandoc_available("3.1.8"), # revised citeproc command
-    pandoc321 = rmarkdown::pandoc_available("3.2.1") # new pandocbounded comment required
+    pandoc321 = rmarkdown::pandoc_available("3.2.1"), # new pandocbounded comment required
+    pandoc3821 = rmarkdown::pandoc_available("3.8.2.1") # new table counter required
   ))
   fmt$pandoc$args <- c(fmt$pandoc$args, args)
   fmt
diff --git a/inst/rmarkdown/templates/acm/resources/template.tex b/inst/rmarkdown/templates/acm/resources/template.tex
@@ -76,6 +76,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/acs/resources/template.tex b/inst/rmarkdown/templates/acs/resources/template.tex
@@ -81,6 +81,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/aea/resources/template.tex b/inst/rmarkdown/templates/aea/resources/template.tex
@@ -35,6 +35,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/agu/resources/template.tex b/inst/rmarkdown/templates/agu/resources/template.tex
@@ -76,6 +76,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/amq/resources/template.tex b/inst/rmarkdown/templates/amq/resources/template.tex
@@ -250,6 +250,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/ams/resources/template.tex b/inst/rmarkdown/templates/ams/resources/template.tex
@@ -29,6 +29,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/arxiv/resources/template.tex b/inst/rmarkdown/templates/arxiv/resources/template.tex
@@ -43,6 +43,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/asa/resources/template.tex b/inst/rmarkdown/templates/asa/resources/template.tex
@@ -42,6 +42,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/bioinformatics/resources/template.tex b/inst/rmarkdown/templates/bioinformatics/resources/template.tex
@@ -14,6 +14,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/biometrics/resources/template.tex b/inst/rmarkdown/templates/biometrics/resources/template.tex
@@ -49,6 +49,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/copernicus/resources/template.tex b/inst/rmarkdown/templates/copernicus/resources/template.tex
@@ -175,6 +175,8 @@
 % $if(tables)$
 % % From pandoc table feature
 % \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 % $if(multirow)$
 % \usepackage{multirow}
 % $endif$
diff --git a/inst/rmarkdown/templates/elsevier/resources/template.tex b/inst/rmarkdown/templates/elsevier/resources/template.tex
@@ -153,6 +153,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/frontiers/resources/template.tex b/inst/rmarkdown/templates/frontiers/resources/template.tex
@@ -75,6 +75,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/glossa/resources/template.tex b/inst/rmarkdown/templates/glossa/resources/template.tex
@@ -79,6 +79,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/ieee/resources/template.tex b/inst/rmarkdown/templates/ieee/resources/template.tex
@@ -381,6 +381,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/ims/resources/template.tex b/inst/rmarkdown/templates/ims/resources/template.tex
@@ -50,6 +50,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/informs/resources/template.tex b/inst/rmarkdown/templates/informs/resources/template.tex
@@ -25,6 +25,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/iop/resources/template.tex b/inst/rmarkdown/templates/iop/resources/template.tex
@@ -43,6 +43,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/isba/resources/template.tex b/inst/rmarkdown/templates/isba/resources/template.tex
@@ -35,6 +35,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/jasa/resources/template.tex b/inst/rmarkdown/templates/jasa/resources/template.tex
@@ -70,6 +70,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/jedm/resources/template.tex b/inst/rmarkdown/templates/jedm/resources/template.tex
@@ -37,6 +37,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/joss/resources/template.tex b/inst/rmarkdown/templates/joss/resources/template.tex
@@ -305,6 +305,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/jss/resources/template.tex b/inst/rmarkdown/templates/jss/resources/template.tex
@@ -70,6 +70,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/lipics/resources/template.tex b/inst/rmarkdown/templates/lipics/resources/template.tex
@@ -78,6 +78,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/lncs/resources/template.tex b/inst/rmarkdown/templates/lncs/resources/template.tex
@@ -22,6 +22,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/mdpi/resources/template.tex b/inst/rmarkdown/templates/mdpi/resources/template.tex
@@ -220,6 +220,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/mnras/resources/template.tex b/inst/rmarkdown/templates/mnras/resources/template.tex
@@ -65,6 +65,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/oup_v0/resources/template.tex b/inst/rmarkdown/templates/oup_v0/resources/template.tex
@@ -107,6 +107,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/oup_v1/resources/template.tex b/inst/rmarkdown/templates/oup_v1/resources/template.tex
@@ -101,6 +101,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/peerj/resources/template.tex b/inst/rmarkdown/templates/peerj/resources/template.tex
@@ -31,6 +31,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/pihph/resources/template.tex b/inst/rmarkdown/templates/pihph/resources/template.tex
@@ -217,6 +217,8 @@ \section*{\textcolor{pihphgreen}{Comments invited}}
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/plos/resources/template.tex b/inst/rmarkdown/templates/plos/resources/template.tex
@@ -183,6 +183,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/pnas/resources/template.tex b/inst/rmarkdown/templates/pnas/resources/template.tex
@@ -19,6 +19,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/rjournal/resources/RJwrapper.tex b/inst/rmarkdown/templates/rjournal/resources/RJwrapper.tex
@@ -17,6 +17,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/rsos/resources/template.tex b/inst/rmarkdown/templates/rsos/resources/template.tex
@@ -27,6 +27,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/rss/resources/template.tex b/inst/rmarkdown/templates/rss/resources/template.tex
@@ -50,6 +50,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array, tabularx}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/sage/resources/template.tex b/inst/rmarkdown/templates/sage/resources/template.tex
@@ -19,6 +19,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/sim/resources/template.tex b/inst/rmarkdown/templates/sim/resources/template.tex
@@ -16,6 +16,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/springer/resources/template.tex b/inst/rmarkdown/templates/springer/resources/template.tex
@@ -70,6 +70,8 @@
 $if(tables)$
 % From pandoc table feature
 \usepackage{longtable,booktabs,array}
+$if(pandoc3821)$\newcounter{none} % for unnumbered tables
+$endif$
 $if(multirow)$
 \usepackage{multirow}
 $endif$
diff --git a/inst/rmarkdown/templates/tf/resources/template.tex b/inst/rmarkdown/templates/tf/resources/template.tex
diff --git a/inst/rmarkdown/templates/trb/resources/template.tex b/inst/rmarkdown/templates/trb/resources/template.tex
diff --git a/inst/rmarkdown/templates/wellcomeor/resources/template.tex b/inst/rmarkdown/templates/wellcomeor/resources/template.tex
diff --git a/tests/testit/test-formats.R b/tests/testit/test-formats.R
diff --git a/tests/testthat/test-check-template.R b/tests/testthat/test-check-template.R
