Skip to content

Out of memory #273

@laomaizi-beagle

Description

@laomaizi-beagle

I run the first step wtdbg and encountered an issue

Quatiles:
10% 20% 30% 40% 50% 60% 70% 80% 90% 95%
51 91 144 210 290 408 641 1390 5501 19481
** PROC_STAT(0) **: real 4816.920 sec, user 9238.470 sec, sys 273.730 sec, maxrss 56044392.0 kB, maxvsize 61411212.0 kB
[Thu Jan 2 19:57:45 2025] - high frequency kmer depth is set to 20097
-- Out of memory, try to allocate 188978561024 bytes, old size 256, old addr 0x1a8e780 in encap_list -- mem_share.h:219 --
wtdbg2[0x4120a1]
wtdbg2[0x421491]
wtdbg2[0x4237b3]
wtdbg2[0x446271]
wtdbg2[0x44d13d]
wtdbg2[0x407e6b]
/lib64/libc.so.6(__libc_start_main+0xe5)[0x148f3c5aed85]
wtdbg2[0x4094ee]

And this is my command line:

wtdbg2 -i minshan.fastq.gz -x sq -t 2 -g 4.5g -fo minshan 1>wtdbg.log 2>&1

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions