Version 0.12.1

Added

• rbt vcf-report which allows to create an interactive HTML report allowing advanced analysis of variants from BCF/VCF and BAM files.

Removed

• rbt oncoprint is now included in rbt vcf-report and therefore has been removed.

Version 0.11.0

• Flag --sources that allows to constrain data sources for dgidb annotation of VCF/BCFs.

Version 0.10.3

• New subcommand for generating stats on sequence data
• Added flag --vep-annotation to oncoprint subcommand for parsing ANN-field content created by VEP

Version 0.10.2

• Only print recurrent genes in oncoprint, in order to save time and space.

Version 0.10.1

Polish oncoprint display.

Version 0.10.0

Added

• rbt oncoprint, which allows to create an interactive HTML oncoprint from BCF/VCF files.

Changed

• rbt call-consensus-reads has been renamed to rbt collapse-reads-to-fragments, which better highlights what is actually done.

Version 0.9.2

This version fixes the output of vcf-annotate-dgidb to be BCF.

Version 0.8.0

For details see CHANGELOG.md.

Version 0.4.0

For details see CHANGELOG.md.

Version 0.2.9 of Rust-Bio-Tools

This release fixes some issues with variant parsing for vcf-match.