fix: move examples directory to .conductor/examples to avoid conflicts

- Update conductor-init.sh to copy examples to .conductor/examples
- Update install.sh to reference new location
- Update Makefile demo target to use new location

This prevents conflicts when installing in projects that already have
an examples directory in their root. All conductor-related files are
now organized under the .conductor directory.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

Author: ryanmac

Makefile

@@ -28,7 +28,7 @@ demo: ## Create and run a full demo
 	@echo ""
 	@echo "🎼 Installing conductor-score..."
 	@cd /tmp/conductor-demo && cp -r $(PWD)/.conductor .
-	@cd /tmp/conductor-demo && cp -r $(PWD)/examples .
+	@cd /tmp/conductor-demo && cp -r $(PWD)/examples .conductor/
 	@cd /tmp/conductor-demo && cp $(PWD)/setup.py .
 	@cd /tmp/conductor-demo && cp $(PWD)/.gitignore .conductor-gitignore
 	@cd /tmp/conductor-demo && cat .conductor-gitignore >> .gitignore || cp .conductor-gitignore .gitignore

conductor-init.sh

@@ -112,10 +112,10 @@ cp "$TEMP_DIR/VERSION" . || {
 read -p "Do you want to copy example configurations (recommended for new users)? [Y/n]: " -n 1 -r
 echo ""
 if [[ $REPLY =~ ^[Yy]$ ]] || [[ -z $REPLY ]]; then
-    cp -r "$TEMP_DIR/examples" . || {
+    cp -r "$TEMP_DIR/examples" .conductor/ || {
         echo -e "${YELLOW}⚠️ Failed to copy examples directory (continuing anyway).${NC}"
     }
-    echo -e "${GREEN}✅ Examples copied.${NC}"
+    echo -e "${GREEN}✅ Examples copied to .conductor/examples.${NC}"
 fi
 
 # Clean up temp dir

install.sh

@@ -85,4 +85,4 @@ echo ""
 echo "📚 Next steps:"
 echo "  1. Check the README.md for usage instructions"
 echo "  2. Run 'python setup.py --help' for setup options"
-echo "  3. Explore the examples/ directory for templates"
+echo "  3. Explore the .conductor/examples/ directory for templates"