gh-35438: Ignore deprecation warnings triggered by pythran 0.12.1

These happen with python 3.11, setuptools 67.6.1, numpy 1.24.2. When
pythran 0.12.1 is installed, I get 24 doctest failures due to
deprecation warnings; they are all gone with this commit.

### 📝 Checklist

- [x] The title is concise, informative, and self-explanatory.
- [x] The description explains in detail what this PR is about.
- [x] Current tests cover the changes.

URL: #35438
Reported by: Gonzalo Tornaría
Reviewer(s): Matthias Köppe

Author: Release Manager

build/pkgs/configure/checksums.ini

@@ -1,4 +1,4 @@
 tarball=configure-VERSION.tar.gz
-sha1=224fa9979ee6d884b708b6e96553c73b170fffcc
-md5=eead1165f89ae4b693dbdb252d4e940c
-cksum=1999003763
+sha1=b998c1d37a74b1abb29f6be8c091c5cbf3728064
+md5=da963ef9ed25e1a36b5dd9d774af7143
+cksum=1581756007

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-ad0ea73c1df909186e435713f1c0d7d34d93cd84
+15027934d11e00039607d848697cd9da68bf0536

src/sage/all__sagemath_repl.py

@@ -37,9 +37,17 @@
 warnings.filterwarnings('ignore', category=DeprecationWarning,
     module='(.*[.]_vendor[.])?packaging')
 
-# Ignore numpy warnings triggered by pythran
+# Ignore a few warnings triggered by pythran 0.12.1
 warnings.filterwarnings('ignore', category=DeprecationWarning,
-                        module='pythran')
+    message='\n\n  `numpy.distutils` is deprecated since NumPy 1.23.0',
+    module='pythran.dist')
+warnings.filterwarnings('ignore', category=DeprecationWarning,
+    message='pkg_resources is deprecated as an API|'
+            'Deprecated call to `pkg_resources.declare_namespace(.*)`',
+    module='pkg_resources')
+warnings.filterwarnings('ignore', category=DeprecationWarning,
+    message='msvccompiler is deprecated and slated to be removed',
+    module='distutils.msvccompiler')
 
 warnings.filterwarnings('ignore', category=DeprecationWarning,
                         message='The distutils(.sysconfig module| package) is deprecated',