TCMR/NAMESPACE at main · saisaitian/TCMR · GitHub

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# Generated by roxygen2: do not edit by hand

export("%>%")
export(tcm.CircleHeatmap)
export(tcm.ConnectivityPlot)
export(tcm.EnrichBarplot)
export(tcm.EnrichDotplot)
export(tcm.EnrichGO)
export(tcm.EnrichGSEA)
export(tcm.EnrichPathway)
export(tcm.EnrichTF)
export(tcm.GetDrugSimilarity)
export(tcm.GetDrugSpecificPathway)
export(tcm.LoadAnalyzedDEG)
export(tcm.LoadAnalyzedSigPathway)
export(tcm.LoadData)
export(tcm.LoadExampleDataset)
export(tcm.MatrixDotplot)
export(tcm.RunBatchDEG)
export(tcm.RunDEG)
export(tcm.SSwithCMAP)
export(tcm.SSwithCorrelation)
export(tcm.SSwithGCMAP)
export(tcm.SSwithIntegration)
export(tcm.SSwithLINCS)
export(tcm.SSwithXCos)
export(tcm.SSwithXSum)
export(tcm.SSwithZS)
export(tcm.SeekDrugPair)
export(tcm.TranslateDrugID)
importFrom(DOSE,parse_ratio)
importFrom(clusterProfiler,bitr)
importFrom(clusterProfiler,enrichGO)
importFrom(clusterProfiler,enrichKEGG)
importFrom(clusterProfiler,setReadable)
importFrom(cowplot,plot_grid)
importFrom(forcats,fct_reorder)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_gradientn)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(graphics,barplot)
importFrom(graphics,par)
importFrom(magrittr,"%>%")
importFrom(reshape2,melt)
importFrom(stats,median)
importFrom(stats,order.dendrogram)
importFrom(utils,packageDescription)