Support XML FHIR bundles in test env

Author: timakro

.gitignore

@@ -10,3 +10,4 @@
 /dev/tum-fhir-bundles
 /dev/tum-obds-data
 /dev/json-bundles-from-dresden
+/dev/json-bundles-from-tum-obds2fhir

dev/container-setup-scripts/blaze-loader.sh

@@ -1,2 +1,31 @@
-wget -qO - https://github.com/samply/blazectl/releases/download/v0.17.0/blazectl-0.17.0-linux-amd64.tar.gz | tar -xzf - blazectl
-./blazectl --server http://blaze:8080/fhir upload json-fhir-bundles
+#!/bin/sh
+
+# Install curl if not available
+apk add --no-cache curl
+
+BLAZE_URL="http://blaze:8080/fhir"
+BUNDLE_DIR="fhir-bundles"
+
+echo "Starting to upload FHIR bundles to $BLAZE_URL"
+
+# Upload all JSON files
+echo "Uploading JSON bundles..."
+for file in "$BUNDLE_DIR"/*.json; do
+  if [ -f "$file" ]; then
+    echo "Uploading $file"
+    curl -X POST -H "Content-Type: application/fhir+json" -d @"$file" "$BLAZE_URL"
+    echo ""
+  fi
+done
+
+# Upload all XML files
+echo "Uploading XML bundles..."
+for file in "$BUNDLE_DIR"/*.xml; do
+  if [ -f "$file" ]; then
+    echo "Uploading $file"
+    curl -X POST -H "Content-Type: application/fhir+xml" -d @"$file" "$BLAZE_URL"
+    echo ""
+  fi
+done
+
+echo "Upload complete!"

dev/docker-compose.yml

@@ -1,18 +1,20 @@
 services:
   blaze:
     image: samply/blaze:latest
+    environment:
+      ENFORCE_REFERENTIAL_INTEGRITY: false
     healthcheck:
       test: curl -f http://localhost:8080/fhir/metadata
       start_period: 1m
 
   blaze-loader:
-    image: alpine:3.21
+    image: alpine:latest
     depends_on:
       blaze:
         condition: service_healthy
     volumes:
       - ./container-setup-scripts/blaze-loader.sh:/blaze-loader.sh:ro
-      - ./json-fhir-bundles:/json-fhir-bundles:ro
+      - ./json-fhir-bundles:/fhir-bundles:ro
     command: sh /blaze-loader.sh
 
   postgres: