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1 parent 1457bb3 commit 186dc93Copy full SHA for 186dc93
doc/bcftools.txt
@@ -1975,7 +1975,7 @@ INFO/DPR .. Deprecated in favor of INFO/AD; Number of high-quality bases for
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ont -B -Q5 --max-BQ 30 -I
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pacbio-ccs -D -Q5 --max-BQ 50 -F0.1 -o25 -e1 -M99999
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-*--ambiguous-reads* 'drop'|'incAD'|'incAD0'::
+*--ar, --ambig-reads* 'drop'|'incAD'|'incAD0'::
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What to do with ambiguous indel reads that do not span an entire
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short tandem repeat region: discard ambiguous reads from calling
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and do not increment high-quality AD depth counters ('drop'),
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