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lines changed Original file line number Diff line number Diff line change 11## Release a.b
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3+ Changes affecting the whole of bcftools, or multiple commands:
4+
5+ * Add short option -W for --write-index. The option now accepts an optional parameter
6+ which allows to choose between TBI and CSI index format.
7+
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49Changes affecting specific commands:
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@@ -16,6 +21,12 @@ Changes affecting specific commands:
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1722 - Add new option `--force-single` to support single-file edge case (#2100)
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24+ * bcftools mpileup
25+
26+ - Add new option --indels-cns for an alternative indel calling model, which should increase
27+ the speed on long read data (thanks to using edlib) and the precision (thanks to a number
28+ of heuristics).
29+
1930* bcftools norm
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2132 - Change the order of atomization and multiallelic splitting (when both -a,-m are given)
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