Fix tsv convert bug

daviesrob · daviesrob · commit a508dc3a69ca · 2022-08-16T22:40:46.000+01:00
tsv_setter_chrom() expects a BCF header in its `usr` argument.
diff --git a/vcfconvert.c b/vcfconvert.c
@@ -426,7 +426,7 @@ static void gensample_to_vcf(args_t *args)
     if ( args->gen_3N6 )
     {
         tsv = tsv_init("CHROM,CHROM_POS_REF_ALT,ID,POS,REF_ALT,GT_GP");
-        tsv_register(tsv, "CHROM", tsv_setter_chrom, args);
+        tsv_register(tsv, "CHROM", tsv_setter_chrom, args->header);
     }
     else
         tsv = tsv_init("CHROM_POS_REF_ALT,ID,POS,REF_ALT,GT_GP");

Original file line number	Diff line number	Diff line change
`@@ -426,7 +426,7 @@ static void gensample_to_vcf(args_t *args)`
`426`	`426`	`if ( args->gen_3N6 )`
`427`	`427`	`{`
`428`	`428`	`tsv = tsv_init("CHROM,CHROM_POS_REF_ALT,ID,POS,REF_ALT,GT_GP");`
`429`		`- tsv_register(tsv, "CHROM", tsv_setter_chrom, args);`
	`429`	`+ tsv_register(tsv, "CHROM", tsv_setter_chrom, args->header);`
`430`	`430`	`}`
`431`	`431`	`else`
`432`	`432`	`tsv = tsv_init("CHROM_POS_REF_ALT,ID,POS,REF_ALT,GT_GP");`