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lines changed Original file line number Diff line number Diff line change 66 this complements the existing `-h, --header-lines` option which requires a file
77 with header lines
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9+ * bcftools csq
10+
11+ - A list of consequence types supported by `bcftools csq` has been added to
12+ the manual page. (#1671)
13+
914* bcftools +fill-tags
1015
1116 - Extend generalized functions so that FORMAT tags can be filled as well, for example:
1722
1823* bcftools norm
1924
25+ - Fix an assertion failure triggered when a faulty VCF file with a '-'
26+ character in the REF allele was used with `bcftools norm --atomize`. This
27+ option now checks that the REF allele only includes the allowed characters
28+ A, C, G, T and N. (#1668)
29+
2030 - Fix the loss of phasing in half-missing genotypes in variant atomization (#1689)
2131
2232* bcftools roh
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